Hvulgare HORVU5Hr1G021690
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU5Hr1G021690 [ HORVU5Hr1G021690] |
chr5H | 106796095 | 106808290 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU5Hr1G021690.25 HORVU5Hr1G021690.25 |
High | No | 2103 | OG0001425 | Get ORF Coding potential... Type: noncoding Potential: -1.175 Folding energies... MFEI: -25.299 AMFE: -0.626 GC content %: 40.418 | |
| Hvulgare_HORVU5Hr1G021690.26 HORVU5Hr1G021690.26 |
Low | Yes | 2685 | OG0005923 | Get ORF Coding potential... Type: noncoding Potential: -1.055 Folding energies... MFEI: -28.547 AMFE: -0.701 GC content %: 40.708 | |
| Hvulgare_HORVU5Hr1G021690.27 HORVU5Hr1G021690.27 |
Low | Yes | 5168 | OG0044596 | Get ORF Coding potential... Type: noncoding Potential: -1.185 Folding energies... MFEI: -25.521 AMFE: -0.662 GC content %: 38.545 | |
| Hvulgare_HORVU5Hr1G021690.28 HORVU5Hr1G021690.28 |
Low | No | 2048 | OG0012899 | Get ORF Coding potential... Type: noncoding Potential: -0.422 Folding energies... MFEI: -24.834 AMFE: -0.602 GC content %: 41.260 | |
| Hvulgare_HORVU5Hr1G021690.29 HORVU5Hr1G021690.29 |
Low | No | 3403 | OG0012899 | Get ORF Coding potential... Type: noncoding Potential: -0.473 Folding energies... MFEI: -24.265 AMFE: -0.616 GC content %: 39.406 | |
| Hvulgare_HORVU5Hr1G021690.30 HORVU5Hr1G021690.30 |
Low | Yes | 3955 | OG0005923 | Get ORF Coding potential... Type: noncoding Potential: -1.216 Folding energies... MFEI: -27.301 AMFE: -0.690 GC content %: 39.545 | |
| Hvulgare_HORVU5Hr1G021690.31 HORVU5Hr1G021690.31 |
Low | No | 3141 | OG0044597 | Get ORF Coding potential... Type: noncoding Potential: -0.269 Folding energies... MFEI: -25.887 AMFE: -0.601 GC content %: 43.075 | |
| Hvulgare_HORVU5Hr1G021690.33 HORVU5Hr1G021690.33 |
Low | No | 2504 | OG0001425 | Get ORF Coding potential... Type: noncoding Potential: -0.891 Folding energies... MFEI: -27.214 AMFE: -0.639 GC content %: 42.612 | |
| Hvulgare_HORVU5Hr1G021690.34 HORVU5Hr1G021690.34 |
Low | No | 2116 | OG0001425 | Get ORF Coding potential... Type: noncoding Potential: -1.175 Folding energies... MFEI: -26.368 AMFE: -0.639 GC content %: 41.257 | |
| Hvulgare_HORVU5Hr1G021690.35 HORVU5Hr1G021690.35 |
Low | No | 4321 | OG0012900 | Get ORF Coding potential... Type: noncoding Potential: -0.301 Folding energies... MFEI: -25.324 AMFE: -0.613 GC content %: 41.310 | |
| Hvulgare_HORVU5Hr1G021690.36 HORVU5Hr1G021690.36 |
Low | No | 2156 | OG0001425 | Get ORF Coding potential... Type: noncoding Potential: -0.473 Folding energies... MFEI: -26.635 AMFE: -0.644 GC content %: 41.327 | |
| Hvulgare_HORVU5Hr1G021690.37 HORVU5Hr1G021690.37 |
Low | No | 1085 | OG0001425 | Get ORF Coding potential... Type: noncoding Potential: -0.956 Folding energies... MFEI: -28.820 AMFE: -0.629 GC content %: 45.806 | |
| Hvulgare_HORVU5Hr1G021690.38 HORVU5Hr1G021690.38 |
High | No | 847 | OG0001425 | Get ORF Coding potential... Type: noncoding Potential: -1.163 Folding energies... MFEI: -25.525 AMFE: -0.653 GC content %: 39.079 | |
| Hvulgare_HORVU5Hr1G021690.39 HORVU5Hr1G021690.39 |
High | No | 1962 | OG0012900 | Get ORF Coding potential... Type: noncoding Potential: -1.029 Folding energies... MFEI: -22.727 AMFE: -0.584 GC content %: 38.889 | |
| Hvulgare_HORVU5Hr1G021690.40 HORVU5Hr1G021690.40 |
Low | Yes | 4637 | OG0044598 | Get ORF Coding potential... Type: noncoding Potential: -0.308 Folding energies... MFEI: -26.919 AMFE: -0.663 GC content %: 40.587 | |
| Hvulgare_HORVU5Hr1G021690.47 HORVU5Hr1G021690.47 |
Low | Yes | 2963 | OG0005923 | Get ORF Coding potential... Type: noncoding Potential: -1.200 Folding energies... MFEI: -26.022 AMFE: -0.684 GC content %: 38.036 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU5Hr1G021690.30 | SwissProt | 2021-04-01 | Q9FZB1 | 6.76e-9 |
| Hvulgare_HORVU5Hr1G021690.30 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway | |
| Hvulgare_HORVU5Hr1G021690.30 | Rfam | 14.6 | MIR1122 | 5.7e-14 |
| Hvulgare_HORVU5Hr1G021690.37 | SwissProt | 2021-04-01 | C0LGD6 | 6.54e-7 |
| Hvulgare_HORVU5Hr1G021690.40 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway | |
| Hvulgare_HORVU5Hr1G021690.31 | SwissProt | 2021-04-01 | C0LGP2 | 4.34e-4 |
| Hvulgare_HORVU5Hr1G021690.26 | SwissProt | 2021-04-01 | Q9FZB1 | 4.06e-9 |
| Hvulgare_HORVU5Hr1G021690.40 | Rfam | 14.6 | MIR1122 | 6.6e-14 |
| Hvulgare_HORVU5Hr1G021690.40 | SwissProt | 2021-04-01 | C0LGP2 | 3.72e-4 |
| Hvulgare_HORVU5Hr1G021690.47 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
