Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Hvulgare_HORVU5Hr1G044350 [ HORVU5Hr1G044350] |
chr5H | 342480917 | 342482766 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Hvulgare_HORVU5Hr1G044350.1 HORVU5Hr1G044350.1 |
Low | No | 1370 | OG0044951 | Get ORF Coding potential... Type: noncoding Potential: -0.079 Folding energies... MFEI: -35.672 AMFE: -0.670 GC content %: 53.212 | |
Hvulgare_HORVU5Hr1G044350.14 HORVU5Hr1G044350.14 |
Low | No | 441 | OG0044952 | Get ORF Coding potential... Type: noncoding Potential: -0.119 Folding energies... MFEI: -43.379 AMFE: -0.683 GC content %: 63.492 | |
Hvulgare_HORVU5Hr1G044350.6 HORVU5Hr1G044350.6 |
Low | No | 307 | OG0044953 | Get ORF Coding potential... Type: noncoding Potential: -0.996 Folding energies... MFEI: -35.537 AMFE: -0.609 GC content %: 58.306 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Hvulgare_HORVU5Hr1G044350.14 | SwissProt | 2021-04-01 | Q9SCS3 | 3.82e-38 |
Hvulgare_HORVU5Hr1G044350.6 | SwissProt | 2021-04-01 | Q9SCS3 | 7.17e-5 |
Hvulgare_HORVU5Hr1G044350.1 | SwissProt | 2021-04-01 | F4KI56 | 4.53e-39 |