Hvulgare HORVU5Hr1G048150
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU5Hr1G048150 [ HORVU5Hr1G048150] |
chr5H | 373855062 | 373867316 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU5Hr1G048150.41 HORVU5Hr1G048150.41 |
Low | No | 2549 | OG0045029 | Get ORF Coding potential... Type: noncoding Potential: -0.543 Folding energies... MFEI: -29.957 AMFE: -0.695 GC content %: 43.115 | |
| Hvulgare_HORVU5Hr1G048150.53 HORVU5Hr1G048150.53 |
Low | No | 2312 | OG0045030 | Get ORF Coding potential... Type: noncoding Potential: -0.994 Folding energies... MFEI: -26.955 AMFE: -0.685 GC content %: 39.360 | |
| Hvulgare_HORVU5Hr1G048150.58 HORVU5Hr1G048150.58 |
High | No | 1430 | OG0045031 | Get ORF Coding potential... Type: noncoding Potential: -1.030 Folding energies... MFEI: -26.790 AMFE: -0.667 GC content %: 40.140 | |
| Hvulgare_HORVU5Hr1G048150.59 HORVU5Hr1G048150.59 |
High | No | 274 | OG0045032 | Get ORF Coding potential... Type: noncoding Potential: -1.193 Folding energies... MFEI: -19.708 AMFE: -0.614 GC content %: 32.117 | |
| Hvulgare_HORVU5Hr1G048150.60 HORVU5Hr1G048150.60 |
Low | No | 1228 | OG0045033 | Get ORF Coding potential... Type: noncoding Potential: -1.334 Folding energies... MFEI: -24.601 AMFE: -0.624 GC content %: 39.414 | |
| Hvulgare_HORVU5Hr1G048150.61 HORVU5Hr1G048150.61 |
High | No | 751 | OG0045034 | Get ORF Coding potential... Type: noncoding Potential: -1.279 Folding energies... MFEI: -29.640 AMFE: -0.636 GC content %: 46.605 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU5Hr1G048150.60 | RepBase (RepeatMasker) | 2014-01-31 | DNA | |
| Hvulgare_HORVU5Hr1G048150.41 | SwissProt | 2021-04-01 | A3AVH5 | 3.02e-8 |
| Hvulgare_HORVU5Hr1G048150.53 | SwissProt | 2021-04-01 | A3AVH5 | 3.3e-13 |
| Hvulgare_HORVU5Hr1G048150.41 | RepBase (RepeatMasker) | 2014-01-31 | DNA |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
