Hvulgare HORVU5Hr1G057410
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU5Hr1G057410 [ HORVU5Hr1G057410] |
chr5H | 450501286 | 450559914 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU5Hr1G057410.1 HORVU5Hr1G057410.1 |
Low | No | 1656 | OG0045205 | Get ORF Coding potential... Type: noncoding Potential: -0.786 Folding energies... MFEI: -29.879 AMFE: -0.567 GC content %: 52.657 | |
| Hvulgare_HORVU5Hr1G057410.10 HORVU5Hr1G057410.10 |
Low | No | 3318 | OG0012973 | Get ORF Coding potential... Type: noncoding Potential: -0.881 Folding energies... MFEI: -27.764 AMFE: -0.620 GC content %: 44.756 | |
| Hvulgare_HORVU5Hr1G057410.12 HORVU5Hr1G057410.12 |
Low | No | 2595 | OG0045206 | Get ORF Coding potential... Type: noncoding Potential: -0.854 Folding energies... MFEI: -28.077 AMFE: -0.620 GC content %: 45.318 | |
| Hvulgare_HORVU5Hr1G057410.2 HORVU5Hr1G057410.2 |
Low | No | 2618 | OG0045207 | Get ORF Coding potential... Type: noncoding Potential: -0.855 Folding energies... MFEI: -26.673 AMFE: -0.673 GC content %: 39.610 | |
| Hvulgare_HORVU5Hr1G057410.20 HORVU5Hr1G057410.20 |
Low | No | 2719 | OG0003316 | Get ORF Coding potential... Type: noncoding Potential: -0.859 Folding energies... MFEI: -28.231 AMFE: -0.613 GC content %: 46.046 | |
| Hvulgare_HORVU5Hr1G057410.22 HORVU5Hr1G057410.22 |
Low | No | 2724 | OG0012974 | Get ORF Coding potential... Type: noncoding Potential: -0.860 Folding energies... MFEI: -28.528 AMFE: -0.620 GC content %: 45.999 | |
| Hvulgare_HORVU5Hr1G057410.31 HORVU5Hr1G057410.31 |
Low | No | 2413 | OG0045208 | Get ORF Coding potential... Type: noncoding Potential: -0.845 Folding energies... MFEI: -29.822 AMFE: -0.618 GC content %: 48.239 | |
| Hvulgare_HORVU5Hr1G057410.39 HORVU5Hr1G057410.39 |
Low | No | 2590 | OG0003316 | Get ORF Coding potential... Type: noncoding Potential: -0.854 Folding energies... MFEI: -28.486 AMFE: -0.618 GC content %: 46.100 | |
| Hvulgare_HORVU5Hr1G057410.4 HORVU5Hr1G057410.4 |
Low | No | 2951 | OG0003316 | Get ORF Coding potential... Type: noncoding Potential: -0.869 Folding energies... MFEI: -28.028 AMFE: -0.635 GC content %: 44.121 | |
| Hvulgare_HORVU5Hr1G057410.44 HORVU5Hr1G057410.44 |
Low | No | 2141 | OG0045209 | Get ORF Coding potential... Type: noncoding Potential: -0.828 Folding energies... MFEI: -29.682 AMFE: -0.609 GC content %: 48.762 | |
| Hvulgare_HORVU5Hr1G057410.45 HORVU5Hr1G057410.45 |
Low | No | 1298 | OG0045210 | Get ORF Coding potential... Type: noncoding Potential: -0.739 Folding energies... MFEI: -28.675 AMFE: -0.644 GC content %: 44.530 | |
| Hvulgare_HORVU5Hr1G057410.46 HORVU5Hr1G057410.46 |
Low | No | 2646 | OG0012974 | Get ORF Coding potential... Type: noncoding Potential: -0.856 Folding energies... MFEI: -28.828 AMFE: -0.622 GC content %: 46.372 | |
| Hvulgare_HORVU5Hr1G057410.48 HORVU5Hr1G057410.48 |
Low | No | 2897 | OG0045211 | Get ORF Coding potential... Type: noncoding Potential: -0.867 Folding energies... MFEI: -27.694 AMFE: -0.617 GC content %: 44.874 | |
| Hvulgare_HORVU5Hr1G057410.5 HORVU5Hr1G057410.5 |
Low | No | 2934 | OG0003316 | Get ORF Coding potential... Type: noncoding Potential: -0.868 Folding energies... MFEI: -28.057 AMFE: -0.633 GC content %: 44.308 | |
| Hvulgare_HORVU5Hr1G057410.52 HORVU5Hr1G057410.52 |
High | No | 911 | OG0045212 | Get ORF Coding potential... Type: noncoding Potential: -1.007 Folding energies... MFEI: -24.336 AMFE: -0.621 GC content %: 39.188 | |
| Hvulgare_HORVU5Hr1G057410.53 HORVU5Hr1G057410.53 |
High | No | 837 | OG0012975 | Get ORF Coding potential... Type: noncoding Potential: -1.008 Folding energies... MFEI: -27.109 AMFE: -0.502 GC content %: 54.002 | |
| Hvulgare_HORVU5Hr1G057410.54 HORVU5Hr1G057410.54 |
High | No | 1289 | OG0045213 | Get ORF Coding potential... Type: noncoding Potential: -1.307 Folding energies... MFEI: -24.945 AMFE: -0.509 GC content %: 49.030 | |
| Hvulgare_HORVU5Hr1G057410.55 HORVU5Hr1G057410.55 |
High | No | 812 | OG0012975 | Get ORF Coding potential... Type: noncoding Potential: -1.134 Folding energies... MFEI: -27.352 AMFE: -0.499 GC content %: 54.803 | |
| Hvulgare_HORVU5Hr1G057410.56 HORVU5Hr1G057410.56 |
High | No | 776 | OG0045214 | Get ORF Coding potential... Type: noncoding Potential: -1.191 Folding energies... MFEI: -27.101 AMFE: -0.489 GC content %: 55.412 | |
| Hvulgare_HORVU5Hr1G057410.7 HORVU5Hr1G057410.7 |
Low | No | 3236 | OG0012973 | Get ORF Coding potential... Type: noncoding Potential: -0.879 Folding energies... MFEI: -27.756 AMFE: -0.649 GC content %: 42.738 | |
| Hvulgare_HORVU5Hr1G057410.9 HORVU5Hr1G057410.9 |
Low | No | 2041 | OG0045215 | Get ORF Coding potential... Type: noncoding Potential: -0.950 Folding energies... MFEI: -29.584 AMFE: -0.638 GC content %: 46.399 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU5Hr1G057410.4 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway | |
| Hvulgare_HORVU5Hr1G057410.31 | SwissProt | 2021-04-01 | Q9SJ20 | 1.41e-10 |
| Hvulgare_HORVU5Hr1G057410.10 | SwissProt | 2021-04-01 | Q9SJ20 | 1.98e-10 |
| Hvulgare_HORVU5Hr1G057410.12 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway | |
| Hvulgare_HORVU5Hr1G057410.48 | SwissProt | 2021-04-01 | Q9SJ20 | 1.71e-10 |
| Hvulgare_HORVU5Hr1G057410.46 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway | |
| Hvulgare_HORVU5Hr1G057410.39 | SwissProt | 2021-04-01 | Q9SJ20 | 1.51e-10 |
| Hvulgare_HORVU5Hr1G057410.12 | SwissProt | 2021-04-01 | Q9SJ20 | 1.52e-10 |
| Hvulgare_HORVU5Hr1G057410.2 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway | |
| Hvulgare_HORVU5Hr1G057410.5 | SwissProt | 2021-04-01 | Q9SJ20 | 1.74e-10 |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
