Hvulgare HORVU5Hr1G059140
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU5Hr1G059140 [ HORVU5Hr1G059140] |
chr5H | 461843186 | 461846364 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU5Hr1G059140.1 HORVU5Hr1G059140.1 |
High | No | 1860 | OG0012979 | Get ORF Coding potential... Type: noncoding Potential: -0.524 Folding energies... MFEI: -35.226 AMFE: -0.680 GC content %: 51.828 | |
| Hvulgare_HORVU5Hr1G059140.10 HORVU5Hr1G059140.10 |
High | No | 446 | OG0045240 | Get ORF Coding potential... Type: noncoding Potential: -0.760 Folding energies... MFEI: -49.193 AMFE: -0.688 GC content %: 71.525 | |
| Hvulgare_HORVU5Hr1G059140.2 HORVU5Hr1G059140.2 |
High | No | 3144 | OG0012980 | Get ORF Coding potential... Type: noncoding Potential: -0.569 Folding energies... MFEI: -31.371 AMFE: -0.694 GC content %: 45.229 | |
| Hvulgare_HORVU5Hr1G059140.3 HORVU5Hr1G059140.3 |
High | No | 1540 | OG0012979 | Get ORF Coding potential... Type: noncoding Potential: -0.475 Folding energies... MFEI: -36.247 AMFE: -0.685 GC content %: 52.922 | |
| Hvulgare_HORVU5Hr1G059140.4 HORVU5Hr1G059140.4 |
High | No | 2676 | OG0012980 | Get ORF Coding potential... Type: noncoding Potential: -0.538 Folding energies... MFEI: -30.557 AMFE: -0.690 GC content %: 44.283 | |
| Hvulgare_HORVU5Hr1G059140.7 HORVU5Hr1G059140.7 |
High | No | 639 | OG0045241 | Get ORF Coding potential... Type: noncoding Potential: -0.907 Folding energies... MFEI: -39.452 AMFE: -0.687 GC content %: 57.433 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
