Hvulgare HORVU5Hr1G085760
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU5Hr1G085760 [ HORVU5Hr1G085760] |
chr5H | 575475097 | 575481902 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU5Hr1G085760.16 HORVU5Hr1G085760.16 |
Low | No | 815 | OG0045769 | Get ORF Coding potential... Type: noncoding Potential: -0.328 Folding energies... MFEI: -28.307 AMFE: -0.592 GC content %: 47.853 | |
| Hvulgare_HORVU5Hr1G085760.25 HORVU5Hr1G085760.25 |
Low | No | 896 | OG0013030 | Get ORF Coding potential... Type: noncoding Potential: -0.903 Folding energies... MFEI: -31.138 AMFE: -0.640 GC content %: 48.661 | |
| Hvulgare_HORVU5Hr1G085760.26 HORVU5Hr1G085760.26 |
High | No | 922 | OG0045770 | Get ORF Coding potential... Type: noncoding Potential: -1.184 Folding energies... MFEI: -29.219 AMFE: -0.644 GC content %: 45.336 | |
| Hvulgare_HORVU5Hr1G085760.28 HORVU5Hr1G085760.28 |
Low | No | 1021 | OG0005946 | Get ORF Coding potential... Type: noncoding Potential: -1.002 Folding energies... MFEI: -32.468 AMFE: -0.664 GC content %: 48.874 | |
| Hvulgare_HORVU5Hr1G085760.30 HORVU5Hr1G085760.30 |
Low | No | 1230 | OG0013030 | Get ORF Coding potential... Type: noncoding Potential: -1.020 Folding energies... MFEI: -31.504 AMFE: -0.672 GC content %: 46.911 | |
| Hvulgare_HORVU5Hr1G085760.31 HORVU5Hr1G085760.31 |
Low | No | 1356 | OG0045771 | Get ORF Coding potential... Type: noncoding Potential: -1.040 Folding energies... MFEI: -30.369 AMFE: -0.652 GC content %: 46.608 | |
| Hvulgare_HORVU5Hr1G085760.38 HORVU5Hr1G085760.38 |
Low | No | 1245 | OG0045772 | Get ORF Coding potential... Type: noncoding Potential: -0.752 Folding energies... MFEI: -31.470 AMFE: -0.672 GC content %: 46.827 | |
| Hvulgare_HORVU5Hr1G085760.41 HORVU5Hr1G085760.41 |
Low | No | 1334 | OG0005946 | Get ORF Coding potential... Type: noncoding Potential: -1.102 Folding energies... MFEI: -30.285 AMFE: -0.653 GC content %: 46.402 | |
| Hvulgare_HORVU5Hr1G085760.45 HORVU5Hr1G085760.45 |
Low | No | 1512 | OG0005946 | Get ORF Coding potential... Type: noncoding Potential: -1.110 Folding energies... MFEI: -29.782 AMFE: -0.657 GC content %: 45.304 | |
| Hvulgare_HORVU5Hr1G085760.49 HORVU5Hr1G085760.49 |
Low | No | 1909 | OG0045773 | Get ORF Coding potential... Type: noncoding Potential: -0.936 Folding energies... MFEI: -30.922 AMFE: -0.676 GC content %: 45.731 | |
| Hvulgare_HORVU5Hr1G085760.52 HORVU5Hr1G085760.52 |
Low | No | 1286 | OG0045774 | Get ORF Coding potential... Type: noncoding Potential: -1.029 Folding energies... MFEI: -30.575 AMFE: -0.672 GC content %: 45.490 | |
| Hvulgare_HORVU5Hr1G085760.54 HORVU5Hr1G085760.54 |
Low | No | 1469 | OG0013031 | Get ORF Coding potential... Type: noncoding Potential: -1.117 Folding energies... MFEI: -29.401 AMFE: -0.654 GC content %: 44.929 | |
| Hvulgare_HORVU5Hr1G085760.55 HORVU5Hr1G085760.55 |
Low | No | 1983 | OG0045775 | Get ORF Coding potential... Type: noncoding Potential: -0.882 Folding energies... MFEI: -30.928 AMFE: -0.684 GC content %: 45.184 | |
| Hvulgare_HORVU5Hr1G085760.58 HORVU5Hr1G085760.58 |
Low | No | 914 | OG0045776 | Get ORF Coding potential... Type: noncoding Potential: -1.032 Folding energies... MFEI: -30.131 AMFE: -0.648 GC content %: 46.499 | |
| Hvulgare_HORVU5Hr1G085760.60 HORVU5Hr1G085760.60 |
Low | No | 786 | OG0045777 | Get ORF Coding potential... Type: noncoding Potential: -0.753 Folding energies... MFEI: -32.634 AMFE: -0.644 GC content %: 50.636 | |
| Hvulgare_HORVU5Hr1G085760.61 HORVU5Hr1G085760.61 |
Low | No | 876 | OG0045778 | Get ORF Coding potential... Type: noncoding Potential: -0.816 Folding energies... MFEI: -32.591 AMFE: -0.652 GC content %: 50.000 | |
| Hvulgare_HORVU5Hr1G085760.62 HORVU5Hr1G085760.62 |
High | No | 1042 | OG0013031 | Get ORF Coding potential... Type: noncoding Potential: -1.058 Folding energies... MFEI: -24.568 AMFE: -0.584 GC content %: 42.035 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU5Hr1G085760.25 | RepBase (RepeatMasker) | 2014-01-31 | SINE/tRNA | |
| Hvulgare_HORVU5Hr1G085760.58 | RepBase (RepeatMasker) | 2014-01-31 | SINE/tRNA | |
| Hvulgare_HORVU5Hr1G085760.45 | RepBase (RepeatMasker) | 2014-01-31 | SINE/tRNA | |
| Hvulgare_HORVU5Hr1G085760.28 | RepBase (RepeatMasker) | 2014-01-31 | SINE/tRNA | |
| Hvulgare_HORVU5Hr1G085760.60 | RepBase (RepeatMasker) | 2014-01-31 | SINE/tRNA | |
| Hvulgare_HORVU5Hr1G085760.49 | RepBase (RepeatMasker) | 2014-01-31 | SINE/tRNA | |
| Hvulgare_HORVU5Hr1G085760.30 | RepBase (RepeatMasker) | 2014-01-31 | SINE/tRNA | |
| Hvulgare_HORVU5Hr1G085760.61 | RepBase (RepeatMasker) | 2014-01-31 | SINE/tRNA | |
| Hvulgare_HORVU5Hr1G085760.52 | RepBase (RepeatMasker) | 2014-01-31 | SINE/tRNA | |
| Hvulgare_HORVU5Hr1G085760.31 | RepBase (RepeatMasker) | 2014-01-31 | SINE/tRNA |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
