Hvulgare HORVU5Hr1G099030
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU5Hr1G099030 [ HORVU5Hr1G099030] |
chr5H | 609270518 | 609274347 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU5Hr1G099030.12 HORVU5Hr1G099030.12 |
High | No | 1775 | OG0003322 | Get ORF Coding potential... Type: noncoding Potential: -0.100 Folding energies... MFEI: -29.527 AMFE: -0.656 GC content %: 45.014 | |
| Hvulgare_HORVU5Hr1G099030.14 HORVU5Hr1G099030.14 |
High | No | 1421 | OG0007015 | Get ORF Coding potential... Type: noncoding Potential: -0.029 Folding energies... MFEI: -33.695 AMFE: -0.634 GC content %: 53.132 | |
| Hvulgare_HORVU5Hr1G099030.2 HORVU5Hr1G099030.2 |
High | No | 1954 | OG0003322 | Get ORF Coding potential... Type: noncoding Potential: -0.287 Folding energies... MFEI: -29.406 AMFE: -0.669 GC content %: 43.961 | |
| Hvulgare_HORVU5Hr1G099030.7 HORVU5Hr1G099030.7 |
High | No | 3044 | OG0046024 | Get ORF Coding potential... Type: noncoding Potential: -0.579 Folding energies... MFEI: -27.047 AMFE: -0.661 GC content %: 40.900 | |
| Hvulgare_HORVU5Hr1G099030.8 HORVU5Hr1G099030.8 |
High | No | 1963 | OG0003322 | Get ORF Coding potential... Type: noncoding Potential: -0.544 Folding energies... MFEI: -29.139 AMFE: -0.656 GC content %: 44.422 | |
| Hvulgare_HORVU5Hr1G099030.9 HORVU5Hr1G099030.9 |
High | No | 1961 | OG0003322 | Get ORF Coding potential... Type: noncoding Potential: -0.423 Folding energies... MFEI: -29.179 AMFE: -0.657 GC content %: 44.416 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
