Hvulgare HORVU5Hr1G106890
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU5Hr1G106890 [ HORVU5Hr1G106890] |
chr5H | 625544990 | 625546812 | r1 | Hordeum vulgare (Phytozome 13) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU5Hr1G106890.1 HORVU5Hr1G106890.1 |
High | No | 833 | OG0000325 | Get ORF Coding potential... Type: noncoding Potential: -0.738 Folding energies... MFEI: -35.630 AMFE: -0.661 GC content %: 53.902 | |
| Hvulgare_HORVU5Hr1G106890.2 HORVU5Hr1G106890.2 |
High | No | 1030 | OG0000325 | Get ORF Coding potential... Type: noncoding Potential: -0.781 Folding energies... MFEI: -35.495 AMFE: -0.681 GC content %: 52.136 | |
| Hvulgare_HORVU5Hr1G106890.3 HORVU5Hr1G106890.3 |
High | No | 1037 | OG0000325 | Get ORF Coding potential... Type: noncoding Potential: -0.695 Folding energies... MFEI: -35.342 AMFE: -0.684 GC content %: 51.688 | |
| Hvulgare_HORVU5Hr1G106890.4 HORVU5Hr1G106890.4 |
High | No | 1021 | OG0000325 | Get ORF Coding potential... Type: noncoding Potential: -0.728 Folding energies... MFEI: -34.868 AMFE: -0.670 GC content %: 52.008 | |
| Hvulgare_HORVU5Hr1G106890.5 HORVU5Hr1G106890.5 |
High | No | 1019 | OG0000325 | Get ORF Coding potential... Type: noncoding Potential: -0.728 Folding energies... MFEI: -34.975 AMFE: -0.672 GC content %: 52.012 | |
| Hvulgare_HORVU5Hr1G106890.6 HORVU5Hr1G106890.6 |
High | No | 1064 | OG0000325 | Get ORF Coding potential... Type: noncoding Potential: -0.737 Folding energies... MFEI: -35.545 AMFE: -0.690 GC content %: 51.504 | |
| Hvulgare_HORVU5Hr1G106890.7 HORVU5Hr1G106890.7 |
High | No | 297 | OG0000325 | Get ORF Coding potential... Type: noncoding Potential: -0.828 Folding energies... MFEI: -27.845 AMFE: -0.591 GC content %: 47.138 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
