GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Hvulgare_HORVU5Hr1G107180 [ HORVU5Hr1G107180]	chr5H	626123504	626124759	r1	Hordeum vulgare (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Hvulgare_HORVU5Hr1G107180.1 HORVU5Hr1G107180.1	High	No	569	OG0046150		Get ORF Coding potential... Type: noncoding Potential: -0.967 Folding energies... MFEI: -27.346 AMFE: -0.594 GC content %: 46.046
Hvulgare_HORVU5Hr1G107180.2 HORVU5Hr1G107180.2	High	No	292	OG0193031		Get ORF Coding potential... Type: noncoding Potential: -0.656 Folding energies... MFEI: -30.514 AMFE: -0.547 GC content %: 55.822
Hvulgare_HORVU5Hr1G107180.3 HORVU5Hr1G107180.3	High	No	292	OG0193032		Get ORF Coding potential... Type: noncoding Potential: -0.851 Folding energies... MFEI: -32.192 AMFE: -0.580 GC content %: 55.479
Hvulgare_HORVU5Hr1G107180.4 HORVU5Hr1G107180.4	High	No	300	OG0046151		Get ORF Coding potential... Type: noncoding Potential: -0.858 Folding energies... MFEI: -33.200 AMFE: -0.596 GC content %: 55.667

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).