Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Hvulgare_HORVU5Hr1G111380 [ HORVU5Hr1G111380] |
chr5H | 636116637 | 636118763 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Hvulgare_HORVU5Hr1G111380.1 HORVU5Hr1G111380.1 |
Low | No | 602 | OG0013063 | Get ORF Coding potential... Type: noncoding Potential: -0.419 Folding energies... MFEI: -32.757 AMFE: -0.594 GC content %: 55.150 | |
Hvulgare_HORVU5Hr1G111380.2 HORVU5Hr1G111380.2 |
Low | No | 582 | OG0046197 | Get ORF Coding potential... Type: noncoding Potential: -0.771 Folding energies... MFEI: -29.296 AMFE: -0.565 GC content %: 51.890 | |
Hvulgare_HORVU5Hr1G111380.4 HORVU5Hr1G111380.4 |
High | No | 667 | OG0013063 | Get ORF Coding potential... Type: noncoding Potential: -1.080 Folding energies... MFEI: -23.658 AMFE: -0.591 GC content %: 40.030 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Hvulgare_HORVU5Hr1G111380.1 | SwissProt | 2021-04-01 | Q38UT4 | 5.6e-5 |
Hvulgare_HORVU5Hr1G111380.2 | SwissProt | 2021-04-01 | Q38UT4 | 4.39e-5 |