Hvulgare HORVU6Hr1G002330
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU6Hr1G002330 [ HORVU6Hr1G002330] |
chr6H | 6262381 | 6269974 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU6Hr1G002330.13 HORVU6Hr1G002330.13 |
Low | No | 524 | OG0046467 | Get ORF Coding potential... Type: noncoding Potential: -0.094 Folding energies... MFEI: -33.302 AMFE: -0.625 GC content %: 53.244 | |
| Hvulgare_HORVU6Hr1G002330.2 HORVU6Hr1G002330.2 |
High | No | 1122 | OG0013080 | Get ORF Coding potential... Type: noncoding Potential: -0.752 Folding energies... MFEI: -28.806 AMFE: -0.679 GC content %: 42.424 | |
| Hvulgare_HORVU6Hr1G002330.3 HORVU6Hr1G002330.3 |
Low | No | 1206 | OG0013080 | Get ORF Coding potential... Type: noncoding Potential: -0.623 Folding energies... MFEI: -27.313 AMFE: -0.670 GC content %: 40.796 | |
| Hvulgare_HORVU6Hr1G002330.4 HORVU6Hr1G002330.4 |
High | No | 825 | OG0005959 | Get ORF Coding potential... Type: noncoding Potential: -0.444 Folding energies... MFEI: -32.642 AMFE: -0.696 GC content %: 46.909 | |
| Hvulgare_HORVU6Hr1G002330.6 HORVU6Hr1G002330.6 |
High | No | 601 | OG0046468 | Get ORF Coding potential... Type: noncoding Potential: -0.069 Folding energies... MFEI: -32.213 AMFE: -0.663 GC content %: 48.586 | |
| Hvulgare_HORVU6Hr1G002330.7 HORVU6Hr1G002330.7 |
Low | No | 751 | OG0005959 | Get ORF Coding potential... Type: noncoding Potential: -0.082 Folding energies... MFEI: -31.971 AMFE: -0.661 GC content %: 48.336 | |
| Hvulgare_HORVU6Hr1G002330.9 HORVU6Hr1G002330.9 |
Low | No | 725 | OG0005959 | Get ORF Coding potential... Type: noncoding Potential: -0.081 Folding energies... MFEI: -32.703 AMFE: -0.668 GC content %: 48.966 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU6Hr1G002330.13 | SwissProt | 2021-04-01 | O64645 | 8.46e-6 |
| Hvulgare_HORVU6Hr1G002330.3 | SwissProt | 2021-04-01 | O64645 | 4.55e-5 |
| Hvulgare_HORVU6Hr1G002330.7 | SwissProt | 2021-04-01 | O64645 | 6.85e-5 |
| Hvulgare_HORVU6Hr1G002330.9 | SwissProt | 2021-04-01 | O64645 | 8.23e-5 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
