GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Hvulgare_HORVU6Hr1G005080 [ HORVU6Hr1G005080]	chr6H	10921339	10925628	r1	Hordeum vulgare (Phytozome 13)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Hvulgare_HORVU6Hr1G005080.1 HORVU6Hr1G005080.1	High	No	583	OG0046513		Get ORF Coding potential... Type: noncoding Potential: -1.110 Folding energies... MFEI: -23.945 AMFE: -0.599 GC content %: 39.966
Hvulgare_HORVU6Hr1G005080.13 HORVU6Hr1G005080.13	Low	No	1606	OG0046514		Get ORF Coding potential... Type: coding Potential: 0.406 Folding energies... MFEI: -29.116 AMFE: -0.658 GC content %: 44.271
Hvulgare_HORVU6Hr1G005080.18 HORVU6Hr1G005080.18	Low	No	1586	OG0046515		Get ORF Coding potential... Type: coding Potential: 0.387 Folding energies... MFEI: -28.852 AMFE: -0.658 GC content %: 43.821

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).