Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Hvulgare_HORVU6Hr1G006310 [ HORVU6Hr1G006310] |
chr6H | 13803895 | 13807427 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Hvulgare_HORVU6Hr1G006310.1 HORVU6Hr1G006310.1 |
Low | Yes | 2569 | OG0046541 | Get ORF Coding potential... Type: noncoding Potential: -1.117 Folding energies... MFEI: -31.417 AMFE: -0.721 GC content %: 43.558 | |
Hvulgare_HORVU6Hr1G006310.10 HORVU6Hr1G006310.10 |
Low | Yes | 2304 | OG0046542 | Get ORF Coding potential... Type: noncoding Potential: -1.205 Folding energies... MFEI: -31.007 AMFE: -0.739 GC content %: 41.970 | |
Hvulgare_HORVU6Hr1G006310.6 HORVU6Hr1G006310.6 |
Low | Yes | 2571 | OG0013086 | Get ORF Coding potential... Type: noncoding Potential: -0.644 Folding energies... MFEI: -30.572 AMFE: -0.722 GC content %: 42.357 | |
Hvulgare_HORVU6Hr1G006310.8 HORVU6Hr1G006310.8 |
Low | Yes | 2683 | OG0013086 | Get ORF Coding potential... Type: noncoding Potential: -0.639 Folding energies... MFEI: -29.963 AMFE: -0.723 GC content %: 41.446 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Hvulgare_HORVU6Hr1G006310.1 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm; DNA/TcMar-Stowaway; LTR/Copia; LTR/Gypsy | |
Hvulgare_HORVU6Hr1G006310.8 | SwissProt | 2021-04-01 | Q851R5 | 1.88e-5 |
Hvulgare_HORVU6Hr1G006310.10 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm; DNA/TcMar-Stowaway | |
Hvulgare_HORVU6Hr1G006310.1 | Rfam | 14.6 | mir-1180 | 0.0063 |
Hvulgare_HORVU6Hr1G006310.6 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm; DNA/TcMar-Stowaway | |
Hvulgare_HORVU6Hr1G006310.10 | Rfam | 14.6 | mir-1180 | 0.0056 |
Hvulgare_HORVU6Hr1G006310.1 | SwissProt | 2021-04-01 | A2YIW7 | 2.18e-5 |
Hvulgare_HORVU6Hr1G006310.8 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm; DNA/TcMar-Stowaway | |
Hvulgare_HORVU6Hr1G006310.6 | Rfam | 14.6 | mir-1180 | 0.0063 |
Hvulgare_HORVU6Hr1G006310.10 | SwissProt | 2021-04-01 | Q851R5 | 1.78e-5 |
... further results