GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Hvulgare_HORVU6Hr1G015890 [ HORVU6Hr1G015890]	chr6H	35445811	35447339	r1	Hordeum vulgare (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Hvulgare_HORVU6Hr1G015890.1 HORVU6Hr1G015890.1	Low	No	404	OG0046707		Get ORF Coding potential... Type: coding Potential: 0.481 Folding energies... MFEI: -39.183 AMFE: -0.611 GC content %: 64.109
Hvulgare_HORVU6Hr1G015890.2 HORVU6Hr1G015890.2	Low	No	461	OG0046708		Get ORF Coding potential... Type: noncoding Potential: -0.953 Folding energies... MFEI: -25.011 AMFE: -0.577 GC content %: 43.384

Matches to external databases

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias	Database	Version	Hit	Evalue
Hvulgare_HORVU6Hr1G015890.2	SwissProt	2021-04-01	Q9SMZ4	1.51e-5

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).