Hvulgare HORVU6Hr1G022020
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU6Hr1G022020 [ HORVU6Hr1G022020] |
chr6H | 68726453 | 68728949 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU6Hr1G022020.1 HORVU6Hr1G022020.1 |
High | No | 1681 | OG0013110 | Get ORF Coding potential... Type: noncoding Potential: -1.143 Folding energies... MFEI: -26.308 AMFE: -0.587 GC content %: 44.854 | |
| Hvulgare_HORVU6Hr1G022020.11 HORVU6Hr1G022020.11 |
High | No | 1357 | OG0013110 | Get ORF Coding potential... Type: noncoding Potential: -1.209 Folding energies... MFEI: -26.687 AMFE: -0.592 GC content %: 45.099 | |
| Hvulgare_HORVU6Hr1G022020.12 HORVU6Hr1G022020.12 |
High | No | 1862 | OG0046801 | Get ORF Coding potential... Type: noncoding Potential: -1.158 Folding energies... MFEI: -25.953 AMFE: -0.612 GC content %: 42.427 | |
| Hvulgare_HORVU6Hr1G022020.14 HORVU6Hr1G022020.14 |
High | No | 1689 | OG0046802 | Get ORF Coding potential... Type: noncoding Potential: -1.206 Folding energies... MFEI: -22.850 AMFE: -0.631 GC content %: 36.234 | |
| Hvulgare_HORVU6Hr1G022020.2 HORVU6Hr1G022020.2 |
High | No | 1868 | OG0005966 | Get ORF Coding potential... Type: noncoding Potential: -1.159 Folding energies... MFEI: -25.766 AMFE: -0.595 GC content %: 43.308 | |
| Hvulgare_HORVU6Hr1G022020.5 HORVU6Hr1G022020.5 |
High | No | 1320 | OG0005966 | Get ORF Coding potential... Type: noncoding Potential: -1.038 Folding energies... MFEI: -28.000 AMFE: -0.583 GC content %: 48.030 | |
| Hvulgare_HORVU6Hr1G022020.6 HORVU6Hr1G022020.6 |
High | No | 2063 | OG0046803 | Get ORF Coding potential... Type: noncoding Potential: -1.187 Folding energies... MFEI: -24.200 AMFE: -0.585 GC content %: 41.396 | |
| Hvulgare_HORVU6Hr1G022020.8 HORVU6Hr1G022020.8 |
High | No | 1427 | OG0046804 | Get ORF Coding potential... Type: noncoding Potential: -1.101 Folding energies... MFEI: -25.620 AMFE: -0.564 GC content %: 45.410 | |
| Hvulgare_HORVU6Hr1G022020.9 HORVU6Hr1G022020.9 |
High | No | 1789 | OG0005966 | Get ORF Coding potential... Type: noncoding Potential: -1.152 Folding energies... MFEI: -26.277 AMFE: -0.602 GC content %: 43.656 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
