GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Hvulgare_HORVU6Hr1G027810 [ HORVU6Hr1G027810]	chr6H	110120917	110121339	r1	Hordeum vulgare (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Hvulgare_HORVU6Hr1G027810.1 HORVU6Hr1G027810.1	High	No	347	OG0046894		Get ORF Coding potential... Type: noncoding Potential: -1.216 Folding energies... MFEI: -21.239 AMFE: -0.447 GC content %: 47.550
Hvulgare_HORVU6Hr1G027810.2 HORVU6Hr1G027810.2	High	No	218	OG0046895		Get ORF Coding potential... Type: noncoding Potential: -1.212 Folding energies... MFEI: -25.550 AMFE: -0.493 GC content %: 51.835

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).