Hvulgare HORVU6Hr1G031920
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU6Hr1G031920 [ HORVU6Hr1G031920] |
chr6H | 137590678 | 137595370 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU6Hr1G031920.1 HORVU6Hr1G031920.1 |
Low | No | 836 | OG0001079 | Get ORF Coding potential... Type: noncoding Potential: -0.254 Folding energies... MFEI: -27.129 AMFE: -0.632 GC content %: 42.943 | |
| Hvulgare_HORVU6Hr1G031920.10 HORVU6Hr1G031920.10 |
Low | No | 939 | OG0001432 | Get ORF Coding potential... Type: noncoding Potential: -0.860 Folding energies... MFEI: -31.171 AMFE: -0.648 GC content %: 48.136 | |
| Hvulgare_HORVU6Hr1G031920.11 HORVU6Hr1G031920.11 |
Low | No | 827 | OG0001433 | Get ORF Coding potential... Type: noncoding Potential: -0.107 Folding energies... MFEI: -31.258 AMFE: -0.632 GC content %: 49.456 | |
| Hvulgare_HORVU6Hr1G031920.12 HORVU6Hr1G031920.12 |
Low | No | 1142 | OG0003329 | Get ORF Coding potential... Type: noncoding Potential: -0.288 Folding energies... MFEI: -26.716 AMFE: -0.652 GC content %: 40.981 | |
| Hvulgare_HORVU6Hr1G031920.13 HORVU6Hr1G031920.13 |
Low | No | 743 | OG0001079 | Get ORF Coding potential... Type: noncoding Potential: -0.208 Folding energies... MFEI: -28.869 AMFE: -0.636 GC content %: 45.357 | |
| Hvulgare_HORVU6Hr1G031920.14 HORVU6Hr1G031920.14 |
Low | No | 801 | OG0001079 | Get ORF Coding potential... Type: noncoding Potential: -0.226 Folding energies... MFEI: -30.562 AMFE: -0.634 GC content %: 48.190 | |
| Hvulgare_HORVU6Hr1G031920.15 HORVU6Hr1G031920.15 |
Low | No | 742 | OG0001433 | Get ORF Coding potential... Type: noncoding Potential: -0.054 Folding energies... MFEI: -31.146 AMFE: -0.642 GC content %: 48.518 | |
| Hvulgare_HORVU6Hr1G031920.16 HORVU6Hr1G031920.16 |
Low | No | 1138 | OG0003330 | Get ORF Coding potential... Type: noncoding Potential: -0.972 Folding energies... MFEI: -29.877 AMFE: -0.660 GC content %: 45.255 | |
| Hvulgare_HORVU6Hr1G031920.17 HORVU6Hr1G031920.17 |
Low | No | 845 | OG0001079 | Get ORF Coding potential... Type: noncoding Potential: -0.242 Folding energies... MFEI: -30.923 AMFE: -0.631 GC content %: 48.994 | |
| Hvulgare_HORVU6Hr1G031920.18 HORVU6Hr1G031920.18 |
Low | No | 1005 | OG0003331 | Get ORF Coding potential... Type: noncoding Potential: -0.150 Folding energies... MFEI: -30.050 AMFE: -0.644 GC content %: 46.667 | |
| Hvulgare_HORVU6Hr1G031920.19 HORVU6Hr1G031920.19 |
Low | No | 1129 | OG0001433 | Get ORF Coding potential... Type: noncoding Potential: -0.909 Folding energies... MFEI: -29.610 AMFE: -0.649 GC content %: 45.616 | |
| Hvulgare_HORVU6Hr1G031920.2 HORVU6Hr1G031920.2 |
Low | No | 1349 | OG0003329 | Get ORF Coding potential... Type: noncoding Potential: -0.325 Folding energies... MFEI: -28.191 AMFE: -0.659 GC content %: 42.772 | |
| Hvulgare_HORVU6Hr1G031920.20 HORVU6Hr1G031920.20 |
Low | No | 1022 | OG0003331 | Get ORF Coding potential... Type: noncoding Potential: -0.154 Folding energies... MFEI: -29.863 AMFE: -0.640 GC content %: 46.673 | |
| Hvulgare_HORVU6Hr1G031920.21 HORVU6Hr1G031920.21 |
Low | No | 916 | OG0001432 | Get ORF Coding potential... Type: noncoding Potential: -0.855 Folding energies... MFEI: -31.135 AMFE: -0.641 GC content %: 48.581 | |
| Hvulgare_HORVU6Hr1G031920.22 HORVU6Hr1G031920.22 |
Low | No | 805 | OG0001433 | Get ORF Coding potential... Type: noncoding Potential: -0.091 Folding energies... MFEI: -31.739 AMFE: -0.634 GC content %: 50.062 | |
| Hvulgare_HORVU6Hr1G031920.23 HORVU6Hr1G031920.23 |
Low | No | 1347 | OG0003330 | Get ORF Coding potential... Type: noncoding Potential: -0.997 Folding energies... MFEI: -31.151 AMFE: -0.625 GC content %: 49.814 | |
| Hvulgare_HORVU6Hr1G031920.24 HORVU6Hr1G031920.24 |
Low | No | 1054 | OG0001079 | Get ORF Coding potential... Type: noncoding Potential: -0.302 Folding energies... MFEI: -33.463 AMFE: -0.619 GC content %: 54.080 | |
| Hvulgare_HORVU6Hr1G031920.25 HORVU6Hr1G031920.25 |
Low | No | 1098 | OG0001432 | Get ORF Coding potential... Type: noncoding Potential: -0.890 Folding energies... MFEI: -33.315 AMFE: -0.626 GC content %: 53.188 | |
| Hvulgare_HORVU6Hr1G031920.26 HORVU6Hr1G031920.26 |
Low | No | 1421 | OG0003329 | Get ORF Coding potential... Type: noncoding Potential: -0.337 Folding energies... MFEI: -30.380 AMFE: -0.632 GC content %: 48.065 | |
| Hvulgare_HORVU6Hr1G031920.27 HORVU6Hr1G031920.27 |
Low | No | 1148 | OG0046978 | Get ORF Coding potential... Type: noncoding Potential: -0.333 Folding energies... MFEI: -29.146 AMFE: -0.648 GC content %: 44.948 | |
| Hvulgare_HORVU6Hr1G031920.28 HORVU6Hr1G031920.28 |
Low | No | 1174 | OG0046979 | Get ORF Coding potential... Type: noncoding Potential: -0.346 Folding energies... MFEI: -29.557 AMFE: -0.652 GC content %: 45.315 | |
| Hvulgare_HORVU6Hr1G031920.29 HORVU6Hr1G031920.29 |
Low | No | 958 | OG0003331 | Get ORF Coding potential... Type: noncoding Potential: -0.141 Folding energies... MFEI: -29.280 AMFE: -0.637 GC content %: 45.929 | |
| Hvulgare_HORVU6Hr1G031920.3 HORVU6Hr1G031920.3 |
Low | No | 1102 | OG0003330 | Get ORF Coding potential... Type: noncoding Potential: -0.967 Folding energies... MFEI: -26.488 AMFE: -0.642 GC content %: 41.289 | |
| Hvulgare_HORVU6Hr1G031920.30 HORVU6Hr1G031920.30 |
Low | No | 738 | OG0001433 | Get ORF Coding potential... Type: noncoding Potential: -0.053 Folding energies... MFEI: -31.450 AMFE: -0.627 GC content %: 50.136 | |
| Hvulgare_HORVU6Hr1G031920.31 HORVU6Hr1G031920.31 |
Low | No | 1074 | OG0046980 | Get ORF Coding potential... Type: noncoding Potential: -0.985 Folding energies... MFEI: -29.926 AMFE: -0.653 GC content %: 45.810 | |
| Hvulgare_HORVU6Hr1G031920.32 HORVU6Hr1G031920.32 |
Low | No | 1087 | OG0003330 | Get ORF Coding potential... Type: noncoding Potential: -0.965 Folding energies... MFEI: -29.862 AMFE: -0.652 GC content %: 45.814 | |
| Hvulgare_HORVU6Hr1G031920.33 HORVU6Hr1G031920.33 |
Low | No | 1041 | OG0001432 | Get ORF Coding potential... Type: noncoding Potential: -0.880 Folding energies... MFEI: -33.689 AMFE: -0.622 GC content %: 54.179 | |
| Hvulgare_HORVU6Hr1G031920.34 HORVU6Hr1G031920.34 |
Low | No | 993 | OG0001079 | Get ORF Coding potential... Type: noncoding Potential: -0.284 Folding energies... MFEI: -34.099 AMFE: -0.619 GC content %: 55.086 | |
| Hvulgare_HORVU6Hr1G031920.35 HORVU6Hr1G031920.35 |
Low | No | 829 | OG0001432 | Get ORF Coding potential... Type: noncoding Potential: -0.833 Folding energies... MFEI: -31.616 AMFE: -0.639 GC content %: 49.457 | |
| Hvulgare_HORVU6Hr1G031920.36 HORVU6Hr1G031920.36 |
Low | No | 739 | OG0001433 | Get ORF Coding potential... Type: noncoding Potential: -0.053 Folding energies... MFEI: -32.260 AMFE: -0.627 GC content %: 51.421 | |
| Hvulgare_HORVU6Hr1G031920.37 HORVU6Hr1G031920.37 |
Low | No | 1587 | OG0013126 | Get ORF Coding potential... Type: noncoding Potential: -0.948 Folding energies... MFEI: -28.488 AMFE: -0.669 GC content %: 42.596 | |
| Hvulgare_HORVU6Hr1G031920.38 HORVU6Hr1G031920.38 |
Low | No | 1422 | OG0003331 | Get ORF Coding potential... Type: noncoding Potential: -0.240 Folding energies... MFEI: -31.280 AMFE: -0.636 GC content %: 49.156 | |
| Hvulgare_HORVU6Hr1G031920.39 HORVU6Hr1G031920.39 |
Low | No | 992 | OG0013126 | Get ORF Coding potential... Type: noncoding Potential: -0.871 Folding energies... MFEI: -28.528 AMFE: -0.651 GC content %: 43.851 | |
| Hvulgare_HORVU6Hr1G031920.4 HORVU6Hr1G031920.4 |
High | No | 446 | OG0046981 | Get ORF Coding potential... Type: noncoding Potential: -1.188 Folding energies... MFEI: -22.511 AMFE: -0.591 GC content %: 38.117 | |
| Hvulgare_HORVU6Hr1G031920.41 HORVU6Hr1G031920.41 |
Low | No | 831 | OG0013127 | Get ORF Coding potential... Type: noncoding Potential: -0.834 Folding energies... MFEI: -30.000 AMFE: -0.631 GC content %: 47.533 | |
| Hvulgare_HORVU6Hr1G031920.42 HORVU6Hr1G031920.42 |
Low | No | 831 | OG0013127 | Get ORF Coding potential... Type: noncoding Potential: -0.834 Folding energies... MFEI: -31.420 AMFE: -0.632 GC content %: 49.699 | |
| Hvulgare_HORVU6Hr1G031920.5 HORVU6Hr1G031920.5 |
Low | No | 1666 | OG0003329 | Get ORF Coding potential... Type: noncoding Potential: -1.050 Folding energies... MFEI: -28.673 AMFE: -0.672 GC content %: 42.677 | |
| Hvulgare_HORVU6Hr1G031920.6 HORVU6Hr1G031920.6 |
Low | No | 639 | OG0046982 | Get ORF Coding potential... Type: noncoding Potential: -1.175 Folding energies... MFEI: -25.915 AMFE: -0.623 GC content %: 41.628 | |
| Hvulgare_HORVU6Hr1G031920.7 HORVU6Hr1G031920.7 |
Low | No | 1122 | OG0001432 | Get ORF Coding potential... Type: noncoding Potential: -0.894 Folding energies... MFEI: -33.021 AMFE: -0.631 GC content %: 52.317 | |
| Hvulgare_HORVU6Hr1G031920.8 HORVU6Hr1G031920.8 |
Low | No | 851 | OG0001079 | Get ORF Coding potential... Type: noncoding Potential: -0.243 Folding energies... MFEI: -30.118 AMFE: -0.630 GC content %: 47.826 | |
| Hvulgare_HORVU6Hr1G031920.9 HORVU6Hr1G031920.9 |
Low | No | 943 | OG0046983 | Get ORF Coding potential... Type: noncoding Potential: -0.861 Folding energies... MFEI: -31.421 AMFE: -0.650 GC content %: 48.356 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU6Hr1G031920.11 | SwissProt | 2021-04-01 | Q71VM4 | 3.67e-11 |
| Hvulgare_HORVU6Hr1G031920.26 | SwissProt | 2021-04-01 | Q71VM4 | 8.36e-11 |
| Hvulgare_HORVU6Hr1G031920.42 | SwissProt | 2021-04-01 | Q71VM4 | 3.48e-10 |
| Hvulgare_HORVU6Hr1G031920.21 | SwissProt | 2021-04-01 | Q71VM4 | 5.04e-10 |
| Hvulgare_HORVU6Hr1G031920.36 | SwissProt | 2021-04-01 | Q71VM4 | 2.28e-11 |
| Hvulgare_HORVU6Hr1G031920.17 | SwissProt | 2021-04-01 | Q71VM4 | 1.62e-11 |
| Hvulgare_HORVU6Hr1G031920.31 | SwissProt | 2021-04-01 | Q71VM4 | 1.55e-10 |
| Hvulgare_HORVU6Hr1G031920.12 | SwissProt | 2021-04-01 | Q71VM4 | 4.77e-11 |
| Hvulgare_HORVU6Hr1G031920.27 | SwissProt | 2021-04-01 | Q71VM4 | 4.85e-11 |
| Hvulgare_HORVU6Hr1G031920.5 | SwissProt | 2021-04-01 | Q71VM4 | 1.16e-10 |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
