Hvulgare HORVU6Hr1G033480
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU6Hr1G033480 [ HORVU6Hr1G033480] |
chr6H | 153161304 | 153163333 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU6Hr1G033480.10 HORVU6Hr1G033480.10 |
High | No | 1202 | OG0003332 | Get ORF Coding potential... Type: noncoding Potential: -0.590 Folding energies... MFEI: -28.111 AMFE: -0.561 GC content %: 50.083 | |
| Hvulgare_HORVU6Hr1G033480.11 HORVU6Hr1G033480.11 |
High | No | 1279 | OG0013129 | Get ORF Coding potential... Type: noncoding Potential: -0.365 Folding energies... MFEI: -27.490 AMFE: -0.562 GC content %: 48.944 | |
| Hvulgare_HORVU6Hr1G033480.12 HORVU6Hr1G033480.12 |
High | No | 1205 | OG0047029 | Get ORF Coding potential... Type: noncoding Potential: -0.349 Folding energies... MFEI: -27.784 AMFE: -0.557 GC content %: 49.876 | |
| Hvulgare_HORVU6Hr1G033480.15 HORVU6Hr1G033480.15 |
High | No | 1182 | OG0003332 | Get ORF Coding potential... Type: noncoding Potential: -0.396 Folding energies... MFEI: -27.733 AMFE: -0.565 GC content %: 49.069 | |
| Hvulgare_HORVU6Hr1G033480.16 HORVU6Hr1G033480.16 |
High | No | 1105 | OG0047030 | Get ORF Coding potential... Type: noncoding Potential: -0.541 Folding energies... MFEI: -27.774 AMFE: -0.561 GC content %: 49.502 | |
| Hvulgare_HORVU6Hr1G033480.17 HORVU6Hr1G033480.17 |
High | No | 1220 | OG0013129 | Get ORF Coding potential... Type: noncoding Potential: -0.362 Folding energies... MFEI: -27.738 AMFE: -0.573 GC content %: 48.443 | |
| Hvulgare_HORVU6Hr1G033480.18 HORVU6Hr1G033480.18 |
High | No | 1102 | OG0047031 | Get ORF Coding potential... Type: noncoding Potential: -0.352 Folding energies... MFEI: -28.221 AMFE: -0.590 GC content %: 47.822 | |
| Hvulgare_HORVU6Hr1G033480.19 HORVU6Hr1G033480.19 |
High | No | 807 | OG0047032 | Get ORF Coding potential... Type: noncoding Potential: -0.263 Folding energies... MFEI: -23.569 AMFE: -0.575 GC content %: 41.016 | |
| Hvulgare_HORVU6Hr1G033480.20 HORVU6Hr1G033480.20 |
High | No | 1090 | OG0047033 | Get ORF Coding potential... Type: noncoding Potential: -0.477 Folding energies... MFEI: -24.404 AMFE: -0.613 GC content %: 39.817 | |
| Hvulgare_HORVU6Hr1G033480.21 HORVU6Hr1G033480.21 |
High | No | 809 | OG0047034 | Get ORF Coding potential... Type: noncoding Potential: -0.264 Folding energies... MFEI: -23.028 AMFE: -0.577 GC content %: 39.926 | |
| Hvulgare_HORVU6Hr1G033480.3 HORVU6Hr1G033480.3 |
High | No | 1245 | OG0003332 | Get ORF Coding potential... Type: noncoding Potential: -0.378 Folding energies... MFEI: -27.703 AMFE: -0.555 GC content %: 49.880 | |
| Hvulgare_HORVU6Hr1G033480.5 HORVU6Hr1G033480.5 |
High | No | 1838 | OG0047035 | Get ORF Coding potential... Type: noncoding Potential: -0.467 Folding energies... MFEI: -27.867 AMFE: -0.596 GC content %: 46.790 | |
| Hvulgare_HORVU6Hr1G033480.7 HORVU6Hr1G033480.7 |
High | No | 1247 | OG0047036 | Get ORF Coding potential... Type: noncoding Potential: -0.407 Folding energies... MFEI: -27.947 AMFE: -0.566 GC content %: 49.399 | |
| Hvulgare_HORVU6Hr1G033480.9 HORVU6Hr1G033480.9 |
High | No | 1255 | OG0003332 | Get ORF Coding potential... Type: noncoding Potential: -0.380 Folding energies... MFEI: -27.681 AMFE: -0.560 GC content %: 49.402 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
