Hvulgare HORVU6Hr1G037510
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU6Hr1G037510 [ HORVU6Hr1G037510] |
chr6H | 188886547 | 188906942 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU6Hr1G037510.10 HORVU6Hr1G037510.10 |
High | No | 864 | OG0047100 | Get ORF Coding potential... Type: noncoding Potential: -0.884 Folding energies... MFEI: -35.625 AMFE: -0.627 GC content %: 56.829 | |
| Hvulgare_HORVU6Hr1G037510.11 HORVU6Hr1G037510.11 |
High | No | 924 | OG0047101 | Get ORF Coding potential... Type: noncoding Potential: -0.962 Folding energies... MFEI: -33.030 AMFE: -0.618 GC content %: 53.463 | |
| Hvulgare_HORVU6Hr1G037510.12 HORVU6Hr1G037510.12 |
High | No | 747 | OG0047102 | Get ORF Coding potential... Type: noncoding Potential: -1.080 Folding energies... MFEI: -32.945 AMFE: -0.617 GC content %: 53.414 | |
| Hvulgare_HORVU6Hr1G037510.14 HORVU6Hr1G037510.14 |
Low | No | 874 | OG0047103 | Get ORF Coding potential... Type: noncoding Potential: -1.184 Folding energies... MFEI: -24.737 AMFE: -0.597 GC content %: 41.419 | |
| Hvulgare_HORVU6Hr1G037510.15 HORVU6Hr1G037510.15 |
Low | No | 1688 | OG0013139 | Get ORF Coding potential... Type: noncoding Potential: -1.219 Folding energies... MFEI: -26.001 AMFE: -0.637 GC content %: 40.818 | |
| Hvulgare_HORVU6Hr1G037510.8 HORVU6Hr1G037510.8 |
Low | No | 2610 | OG0047104 | Get ORF Coding potential... Type: noncoding Potential: -1.005 Folding energies... MFEI: -30.134 AMFE: -0.631 GC content %: 47.739 | |
| Hvulgare_HORVU6Hr1G037510.9 HORVU6Hr1G037510.9 |
High | No | 1689 | OG0013139 | Get ORF Coding potential... Type: noncoding Potential: -0.962 Folding energies... MFEI: -30.497 AMFE: -0.627 GC content %: 48.668 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU6Hr1G037510.14 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia | |
| Hvulgare_HORVU6Hr1G037510.15 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia | |
| Hvulgare_HORVU6Hr1G037510.8 | RepBase (RepeatMasker) | 2014-01-31 | LINE/RTE-BovB |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
