Hvulgare HORVU6Hr1G040480
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU6Hr1G040480 [ HORVU6Hr1G040480] |
chr6H | 218526299 | 218538144 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU6Hr1G040480.1 HORVU6Hr1G040480.1 |
Low | No | 3186 | OG0047149 | Get ORF Coding potential... Type: noncoding Potential: -1.179 Folding energies... MFEI: -27.913 AMFE: -0.690 GC content %: 40.427 | |
| Hvulgare_HORVU6Hr1G040480.19 HORVU6Hr1G040480.19 |
Low | No | 1250 | OG0010142 | Get ORF Coding potential... Type: noncoding Potential: -0.193 Folding energies... MFEI: -25.480 AMFE: -0.649 GC content %: 39.280 | |
| Hvulgare_HORVU6Hr1G040480.21 HORVU6Hr1G040480.21 |
High | No | 1760 | OG0047150 | Get ORF Coding potential... Type: noncoding Potential: -0.969 Folding energies... MFEI: -30.443 AMFE: -0.670 GC content %: 45.455 | |
| Hvulgare_HORVU6Hr1G040480.22 HORVU6Hr1G040480.22 |
Low | No | 851 | OG0047151 | Get ORF Coding potential... Type: noncoding Potential: -0.747 Folding energies... MFEI: -25.758 AMFE: -0.630 GC content %: 40.893 | |
| Hvulgare_HORVU6Hr1G040480.23 HORVU6Hr1G040480.23 |
Low | No | 2078 | OG0047152 | Get ORF Coding potential... Type: noncoding Potential: -0.510 Folding energies... MFEI: -27.522 AMFE: -0.688 GC content %: 39.990 | |
| Hvulgare_HORVU6Hr1G040480.24 HORVU6Hr1G040480.24 |
Low | No | 3739 | OG0047153 | Get ORF Coding potential... Type: noncoding Potential: -0.653 Folding energies... MFEI: -28.960 AMFE: -0.648 GC content %: 44.691 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU6Hr1G040480.19 | SwissProt | 2021-04-01 | Q9ZS51 | 7.24e-14 |
| Hvulgare_HORVU6Hr1G040480.22 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway | |
| Hvulgare_HORVU6Hr1G040480.23 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway | |
| Hvulgare_HORVU6Hr1G040480.24 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway | |
| Hvulgare_HORVU6Hr1G040480.1 | SwissProt | 2021-04-01 | Q9ZS51 | 2.13e-8 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
