Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Hvulgare_HORVU6Hr1G044610 [ HORVU6Hr1G044610] |
chr6H | 256560790 | 256562035 | r1 | Hordeum vulgare (Phytozome 13) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Hvulgare_HORVU6Hr1G044610.1 HORVU6Hr1G044610.1 |
Low | No | 292 | OG0013148 | Get ORF Coding potential... Type: noncoding Potential: -0.630 Folding energies... MFEI: -22.740 AMFE: -0.507 GC content %: 44.863 | |
Hvulgare_HORVU6Hr1G044610.2 HORVU6Hr1G044610.2 |
High | No | 242 | OG0013148 | Get ORF Coding potential... Type: noncoding Potential: -0.916 Folding energies... MFEI: -22.231 AMFE: -0.522 GC content %: 42.562 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Hvulgare_HORVU6Hr1G044610.1 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy |