Hvulgare HORVU6Hr1G051990
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU6Hr1G051990 [ HORVU6Hr1G051990] |
chr6H | 319245725 | 319255953 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU6Hr1G051990.12 HORVU6Hr1G051990.12 |
High | No | 1639 | OG0013155 | Get ORF Coding potential... Type: noncoding Potential: -0.620 Folding energies... MFEI: -26.675 AMFE: -0.683 GC content %: 39.048 | |
| Hvulgare_HORVU6Hr1G051990.14 HORVU6Hr1G051990.14 |
High | No | 908 | OG0003336 | Get ORF Coding potential... Type: noncoding Potential: -0.356 Folding energies... MFEI: -27.819 AMFE: -0.646 GC content %: 43.062 | |
| Hvulgare_HORVU6Hr1G051990.17 HORVU6Hr1G051990.17 |
High | No | 1571 | OG0013155 | Get ORF Coding potential... Type: noncoding Potential: -0.617 Folding energies... MFEI: -26.219 AMFE: -0.682 GC content %: 38.447 | |
| Hvulgare_HORVU6Hr1G051990.23 HORVU6Hr1G051990.23 |
High | No | 870 | OG0003336 | Get ORF Coding potential... Type: noncoding Potential: -0.344 Folding energies... MFEI: -28.195 AMFE: -0.649 GC content %: 43.448 | |
| Hvulgare_HORVU6Hr1G051990.27 HORVU6Hr1G051990.27 |
High | No | 1333 | OG0003336 | Get ORF Coding potential... Type: noncoding Potential: -0.603 Folding energies... MFEI: -27.142 AMFE: -0.679 GC content %: 39.985 | |
| Hvulgare_HORVU6Hr1G051990.7 HORVU6Hr1G051990.7 |
High | No | 1771 | OG0047301 | Get ORF Coding potential... Type: noncoding Potential: -0.510 Folding energies... MFEI: -26.087 AMFE: -0.675 GC content %: 38.622 | |
| Hvulgare_HORVU6Hr1G051990.8 HORVU6Hr1G051990.8 |
High | No | 730 | OG0003336 | Get ORF Coding potential... Type: noncoding Potential: -0.539 Folding energies... MFEI: -26.548 AMFE: -0.617 GC content %: 43.014 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
