Hvulgare HORVU6Hr1G053850
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU6Hr1G053850 [ HORVU6Hr1G053850] |
chr6H | 338666208 | 338666976 | r1 | Hordeum vulgare (Phytozome 13) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU6Hr1G053850.1 HORVU6Hr1G053850.1 |
High | No | 623 | OG0000702 | Get ORF Coding potential... Type: noncoding Potential: -0.948 Folding energies... MFEI: -30.819 AMFE: -0.627 GC content %: 49.117 | |
| Hvulgare_HORVU6Hr1G053850.2 HORVU6Hr1G053850.2 |
High | No | 560 | OG0000702 | Get ORF Coding potential... Type: noncoding Potential: -0.915 Folding energies... MFEI: -30.232 AMFE: -0.618 GC content %: 48.929 | |
| Hvulgare_HORVU6Hr1G053850.3 HORVU6Hr1G053850.3 |
High | No | 566 | OG0000702 | Get ORF Coding potential... Type: noncoding Potential: -0.891 Folding energies... MFEI: -30.548 AMFE: -0.618 GC content %: 49.470 | |
| Hvulgare_HORVU6Hr1G053850.4 HORVU6Hr1G053850.4 |
High | No | 270 | OG0047345 | Get ORF Coding potential... Type: noncoding Potential: -0.522 Folding energies... MFEI: -34.370 AMFE: -0.623 GC content %: 55.185 | |
| Hvulgare_HORVU6Hr1G053850.5 HORVU6Hr1G053850.5 |
High | No | 249 | OG0000702 | Get ORF Coding potential... Type: noncoding Potential: -0.662 Folding energies... MFEI: -34.458 AMFE: -0.609 GC content %: 56.627 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
