Hvulgare HORVU6Hr1G058460
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU6Hr1G058460 [ HORVU6Hr1G058460] |
chr6H | 383151889 | 383155569 | r1 | Hordeum vulgare (Phytozome 13) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU6Hr1G058460.1 HORVU6Hr1G058460.1 |
High | No | 779 | OG0047439 | Get ORF Coding potential... Type: noncoding Potential: -1.160 Folding energies... MFEI: -31.515 AMFE: -0.592 GC content %: 53.273 | |
| Hvulgare_HORVU6Hr1G058460.2 HORVU6Hr1G058460.2 |
High | No | 1604 | OG0047440 | Get ORF Coding potential... Type: noncoding Potential: -1.101 Folding energies... MFEI: -40.680 AMFE: -0.718 GC content %: 56.671 | |
| Hvulgare_HORVU6Hr1G058460.3 HORVU6Hr1G058460.3 |
High | No | 885 | OG0013171 | Get ORF Coding potential... Type: noncoding Potential: -0.993 Folding energies... MFEI: -29.842 AMFE: -0.572 GC content %: 52.203 | |
| Hvulgare_HORVU6Hr1G058460.4 HORVU6Hr1G058460.4 |
High | No | 971 | OG0013171 | Get ORF Coding potential... Type: noncoding Potential: -1.070 Folding energies... MFEI: -31.576 AMFE: -0.600 GC content %: 52.626 | |
| Hvulgare_HORVU6Hr1G058460.5 HORVU6Hr1G058460.5 |
High | No | 1459 | OG0047441 | Get ORF Coding potential... Type: noncoding Potential: -1.096 Folding energies... MFEI: -40.699 AMFE: -0.713 GC content %: 57.094 | |
| Hvulgare_HORVU6Hr1G058460.6 HORVU6Hr1G058460.6 |
High | No | 752 | OG0047442 | Get ORF Coding potential... Type: noncoding Potential: -1.049 Folding energies... MFEI: -29.867 AMFE: -0.593 GC content %: 50.399 | |
| Hvulgare_HORVU6Hr1G058460.7 HORVU6Hr1G058460.7 |
High | No | 767 | OG0047443 | Get ORF Coding potential... Type: noncoding Potential: -1.051 Folding energies... MFEI: -40.430 AMFE: -0.731 GC content %: 55.280 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
