Hvulgare HORVU6Hr1G059090
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU6Hr1G059090 [ HORVU6Hr1G059090] |
chr6H | 390750195 | 390761825 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU6Hr1G059090.1 HORVU6Hr1G059090.1 |
Low | Yes | 4012 | OG0047448 | Get ORF Coding potential... Type: noncoding Potential: -0.820 Folding energies... MFEI: -29.591 AMFE: -0.677 GC content %: 43.694 | |
| Hvulgare_HORVU6Hr1G059090.10 HORVU6Hr1G059090.10 |
High | No | 706 | OG0003339 | Get ORF Coding potential... Type: noncoding Potential: -0.422 Folding energies... MFEI: -30.510 AMFE: -0.641 GC content %: 47.592 | |
| Hvulgare_HORVU6Hr1G059090.11 HORVU6Hr1G059090.11 |
Low | Yes | 2863 | OG0047449 | Get ORF Coding potential... Type: noncoding Potential: -0.807 Folding energies... MFEI: -31.006 AMFE: -0.690 GC content %: 44.953 | |
| Hvulgare_HORVU6Hr1G059090.12 HORVU6Hr1G059090.12 |
Low | Yes | 3105 | OG0047450 | Get ORF Coding potential... Type: noncoding Potential: -0.848 Folding energies... MFEI: -29.704 AMFE: -0.692 GC content %: 42.899 | |
| Hvulgare_HORVU6Hr1G059090.13 HORVU6Hr1G059090.13 |
High | No | 741 | OG0003340 | Get ORF Coding potential... Type: noncoding Potential: -0.498 Folding energies... MFEI: -35.236 AMFE: -0.650 GC content %: 54.251 | |
| Hvulgare_HORVU6Hr1G059090.14 HORVU6Hr1G059090.14 |
High | No | 761 | OG0003339 | Get ORF Coding potential... Type: noncoding Potential: -0.442 Folding energies... MFEI: -31.603 AMFE: -0.668 GC content %: 47.306 | |
| Hvulgare_HORVU6Hr1G059090.15 HORVU6Hr1G059090.15 |
High | No | 291 | OG0002951 | Get ORF Coding potential... Type: noncoding Potential: -0.645 Folding energies... MFEI: -33.471 AMFE: -0.637 GC content %: 52.577 | |
| Hvulgare_HORVU6Hr1G059090.2 HORVU6Hr1G059090.2 |
High | No | 1955 | OG0047451 | Get ORF Coding potential... Type: noncoding Potential: -0.572 Folding energies... MFEI: -31.279 AMFE: -0.642 GC content %: 48.696 | |
| Hvulgare_HORVU6Hr1G059090.4 HORVU6Hr1G059090.4 |
High | No | 892 | OG0003340 | Get ORF Coding potential... Type: noncoding Potential: -0.551 Folding energies... MFEI: -32.130 AMFE: -0.630 GC content %: 51.009 | |
| Hvulgare_HORVU6Hr1G059090.5 HORVU6Hr1G059090.5 |
High | No | 606 | OG0003339 | Get ORF Coding potential... Type: noncoding Potential: -0.379 Folding energies... MFEI: -31.518 AMFE: -0.641 GC content %: 49.175 | |
| Hvulgare_HORVU6Hr1G059090.6 HORVU6Hr1G059090.6 |
High | No | 1012 | OG0047452 | Get ORF Coding potential... Type: noncoding Potential: -0.632 Folding energies... MFEI: -28.330 AMFE: -0.647 GC content %: 43.775 | |
| Hvulgare_HORVU6Hr1G059090.7 HORVU6Hr1G059090.7 |
High | No | 743 | OG0003340 | Get ORF Coding potential... Type: noncoding Potential: -0.499 Folding energies... MFEI: -33.701 AMFE: -0.644 GC content %: 52.355 | |
| Hvulgare_HORVU6Hr1G059090.8 HORVU6Hr1G059090.8 |
High | No | 613 | OG0003339 | Get ORF Coding potential... Type: noncoding Potential: -0.382 Folding energies... MFEI: -31.354 AMFE: -0.641 GC content %: 48.940 | |
| Hvulgare_HORVU6Hr1G059090.9 HORVU6Hr1G059090.9 |
High | No | 690 | OG0003340 | Get ORF Coding potential... Type: noncoding Potential: -0.478 Folding energies... MFEI: -35.174 AMFE: -0.645 GC content %: 54.493 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU6Hr1G059090.12 | Rfam | 14.6 | MIR1122 | 3.2e-15 |
| Hvulgare_HORVU6Hr1G059090.1 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway | |
| Hvulgare_HORVU6Hr1G059090.11 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway | |
| Hvulgare_HORVU6Hr1G059090.12 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway | |
| Hvulgare_HORVU6Hr1G059090.1 | Rfam | 14.6 | MIR1122 | 4.1e-15 |
| Hvulgare_HORVU6Hr1G059090.11 | Rfam | 14.6 | MIR1122 | 2.9e-15 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
