Hvulgare HORVU6Hr1G060410
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU6Hr1G060410 [ HORVU6Hr1G060410] |
chr6H | 401470834 | 401486182 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU6Hr1G060410.13 HORVU6Hr1G060410.13 |
Low | No | 548 | OG0019577 | Get ORF Coding potential... Type: noncoding Potential: -0.973 Folding energies... MFEI: -27.372 AMFE: -0.598 GC content %: 45.803 | |
| Hvulgare_HORVU6Hr1G060410.14 HORVU6Hr1G060410.14 |
Low | Yes | 1192 | OG0047473 | Get ORF Coding potential... Type: noncoding Potential: -0.623 Folding energies... MFEI: -31.921 AMFE: -0.675 GC content %: 47.315 | |
| Hvulgare_HORVU6Hr1G060410.15 HORVU6Hr1G060410.15 |
Low | Yes | 1425 | OG0013172 | Get ORF Coding potential... Type: noncoding Potential: -1.234 Folding energies... MFEI: -26.961 AMFE: -0.660 GC content %: 40.842 | |
| Hvulgare_HORVU6Hr1G060410.16 HORVU6Hr1G060410.16 |
High | No | 609 | OG0047474 | Get ORF Coding potential... Type: noncoding Potential: -0.433 Folding energies... MFEI: -24.007 AMFE: -0.550 GC content %: 43.678 | |
| Hvulgare_HORVU6Hr1G060410.17 HORVU6Hr1G060410.17 |
Low | Yes | 1028 | OG0013172 | Get ORF Coding potential... Type: noncoding Potential: -1.231 Folding energies... MFEI: -27.685 AMFE: -0.665 GC content %: 41.634 | |
| Hvulgare_HORVU6Hr1G060410.19 HORVU6Hr1G060410.19 |
High | No | 570 | OG0047475 | Get ORF Coding potential... Type: noncoding Potential: -1.112 Folding energies... MFEI: -24.702 AMFE: -0.508 GC content %: 48.596 | |
| Hvulgare_HORVU6Hr1G060410.20 HORVU6Hr1G060410.20 |
High | No | 648 | OG0047476 | Get ORF Coding potential... Type: noncoding Potential: -0.504 Folding energies... MFEI: -20.787 AMFE: -0.535 GC content %: 38.889 | |
| Hvulgare_HORVU6Hr1G060410.22 HORVU6Hr1G060410.22 |
Low | No | 813 | OG0047477 | Get ORF Coding potential... Type: noncoding Potential: -0.738 Folding energies... MFEI: -33.592 AMFE: -0.615 GC content %: 54.613 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU6Hr1G060410.14 | Rfam | 14.6 | MIR821 | 0.0012 |
| Hvulgare_HORVU6Hr1G060410.15 | Rfam | 14.6 | MIR821 | 0.0015 |
| Hvulgare_HORVU6Hr1G060410.17 | Rfam | 14.6 | MIR821 | 0.0011 |
| Hvulgare_HORVU6Hr1G060410.13 | SwissProt | 2021-04-01 | Q9LVY0 | 2.67e-6 |
| Hvulgare_HORVU6Hr1G060410.22 | SwissProt | 2021-04-01 | Q0DZ85 | 9.24e-10 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
