Hvulgare HORVU6Hr1G061700
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU6Hr1G061700 [ HORVU6Hr1G061700] |
chr6H | 412833065 | 412839349 | r1 | Hordeum vulgare (Phytozome 13) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU6Hr1G061700.1 HORVU6Hr1G061700.1 |
Low | No | 1548 | OG0003342 | Get ORF Coding potential... Type: noncoding Potential: -0.191 Folding energies... MFEI: -27.610 AMFE: -0.664 GC content %: 41.602 | |
| Hvulgare_HORVU6Hr1G061700.2 HORVU6Hr1G061700.2 |
Low | No | 2325 | OG0047494 | Get ORF Coding potential... Type: noncoding Potential: -0.089 Folding energies... MFEI: -32.348 AMFE: -0.676 GC content %: 47.871 | |
| Hvulgare_HORVU6Hr1G061700.3 HORVU6Hr1G061700.3 |
Low | No | 2542 | OG0047495 | Get ORF Coding potential... Type: noncoding Potential: -0.411 Folding energies... MFEI: -32.742 AMFE: -0.684 GC content %: 47.836 | |
| Hvulgare_HORVU6Hr1G061700.4 HORVU6Hr1G061700.4 |
Low | No | 1077 | OG0003342 | Get ORF Coding potential... Type: noncoding Potential: -0.340 Folding energies... MFEI: -28.663 AMFE: -0.657 GC content %: 43.640 | |
| Hvulgare_HORVU6Hr1G061700.5 HORVU6Hr1G061700.5 |
Low | No | 997 | OG0003342 | Get ORF Coding potential... Type: noncoding Potential: -0.191 Folding energies... MFEI: -30.100 AMFE: -0.658 GC content %: 45.737 | |
| Hvulgare_HORVU6Hr1G061700.6 HORVU6Hr1G061700.6 |
Low | No | 768 | OG0003342 | Get ORF Coding potential... Type: noncoding Potential: -0.484 Folding energies... MFEI: -28.411 AMFE: -0.649 GC content %: 43.750 | |
| Hvulgare_HORVU6Hr1G061700.7 HORVU6Hr1G061700.7 |
Low | No | 1288 | OG0013176 | Get ORF Coding potential... Type: noncoding Potential: -1.176 Folding energies... MFEI: -26.025 AMFE: -0.655 GC content %: 39.752 | |
| Hvulgare_HORVU6Hr1G061700.8 HORVU6Hr1G061700.8 |
High | No | 1209 | OG0013176 | Get ORF Coding potential... Type: noncoding Potential: -1.108 Folding energies... MFEI: -26.534 AMFE: -0.684 GC content %: 38.792 | |
| Hvulgare_HORVU6Hr1G061700.9 HORVU6Hr1G061700.9 |
High | No | 1771 | OG0047496 | Get ORF Coding potential... Type: noncoding Potential: -1.210 Folding energies... MFEI: -30.570 AMFE: -0.659 GC content %: 46.414 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU6Hr1G061700.5 | SwissProt | 2021-04-01 | O65479 | 1.73e-23 |
| Hvulgare_HORVU6Hr1G061700.6 | SwissProt | 2021-04-01 | O65479 | 7.9e-13 |
| Hvulgare_HORVU6Hr1G061700.1 | SwissProt | 2021-04-01 | O65479 | 8.24e-21 |
| Hvulgare_HORVU6Hr1G061700.7 | SwissProt | 2021-04-01 | Q8GYA4 | 5.01e-6 |
| Hvulgare_HORVU6Hr1G061700.2 | SwissProt | 2021-04-01 | O65479 | 4.26e-25 |
| Hvulgare_HORVU6Hr1G061700.3 | SwissProt | 2021-04-01 | O65479 | 2.26e-16 |
| Hvulgare_HORVU6Hr1G061700.4 | SwissProt | 2021-04-01 | O65479 | 3.02e-12 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
