Hvulgare HORVU6Hr1G063590
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU6Hr1G063590 [ HORVU6Hr1G063590] |
chr6H | 429326999 | 429357078 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU6Hr1G063590.2 HORVU6Hr1G063590.2 |
High | No | 417 | OG0001007 | Get ORF Coding potential... Type: noncoding Potential: -0.579 Folding energies... MFEI: -24.700 AMFE: -0.602 GC content %: 41.007 | |
| Hvulgare_HORVU6Hr1G063590.3 HORVU6Hr1G063590.3 |
High | No | 405 | OG0001007 | Get ORF Coding potential... Type: noncoding Potential: -0.553 Folding energies... MFEI: -24.148 AMFE: -0.596 GC content %: 40.494 | |
| Hvulgare_HORVU6Hr1G063590.4 HORVU6Hr1G063590.4 |
High | No | 504 | OG0001007 | Get ORF Coding potential... Type: noncoding Potential: -0.918 Folding energies... MFEI: -20.317 AMFE: -0.539 GC content %: 37.698 | |
| Hvulgare_HORVU6Hr1G063590.5 HORVU6Hr1G063590.5 |
High | No | 503 | OG0001007 | Get ORF Coding potential... Type: noncoding Potential: -0.918 Folding energies... MFEI: -20.258 AMFE: -0.539 GC content %: 37.575 | |
| Hvulgare_HORVU6Hr1G063590.6 HORVU6Hr1G063590.6 |
High | No | 394 | OG0001007 | Get ORF Coding potential... Type: noncoding Potential: -0.957 Folding energies... MFEI: -24.086 AMFE: -0.586 GC content %: 41.117 | |
| Hvulgare_HORVU6Hr1G063590.7 HORVU6Hr1G063590.7 |
High | No | 783 | OG0001007 | Get ORF Coding potential... Type: noncoding Potential: -0.553 Folding energies... MFEI: -27.024 AMFE: -0.624 GC content %: 43.295 | |
| Hvulgare_HORVU6Hr1G063590.8 HORVU6Hr1G063590.8 |
High | No | 271 | OG0047521 | Get ORF Coding potential... Type: noncoding Potential: -0.862 Folding energies... MFEI: -27.306 AMFE: -0.627 GC content %: 43.542 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
