Hvulgare HORVU6Hr1G069120
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU6Hr1G069120 [ HORVU6Hr1G069120] |
chr6H | 478424269 | 478430255 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU6Hr1G069120.11 HORVU6Hr1G069120.11 |
Low | No | 2198 | OG0047619 | Get ORF Coding potential... Type: noncoding Potential: -1.203 Folding energies... MFEI: -28.653 AMFE: -0.647 GC content %: 44.268 | |
| Hvulgare_HORVU6Hr1G069120.17 HORVU6Hr1G069120.17 |
High | No | 1252 | OG0047620 | Get ORF Coding potential... Type: noncoding Potential: -1.126 Folding energies... MFEI: -30.791 AMFE: -0.629 GC content %: 48.962 | |
| Hvulgare_HORVU6Hr1G069120.18 HORVU6Hr1G069120.18 |
High | No | 2279 | OG0047621 | Get ORF Coding potential... Type: noncoding Potential: -1.235 Folding energies... MFEI: -25.511 AMFE: -0.620 GC content %: 41.158 | |
| Hvulgare_HORVU6Hr1G069120.28 HORVU6Hr1G069120.28 |
High | No | 1163 | OG0013185 | Get ORF Coding potential... Type: noncoding Potential: -1.102 Folding energies... MFEI: -26.423 AMFE: -0.599 GC content %: 44.110 | |
| Hvulgare_HORVU6Hr1G069120.36 HORVU6Hr1G069120.36 |
High | No | 1250 | OG0013185 | Get ORF Coding potential... Type: noncoding Potential: -1.112 Folding energies... MFEI: -27.488 AMFE: -0.604 GC content %: 45.520 | |
| Hvulgare_HORVU6Hr1G069120.38 HORVU6Hr1G069120.38 |
High | No | 3553 | OG0047622 | Get ORF Coding potential... Type: noncoding Potential: -1.245 Folding energies... MFEI: -26.001 AMFE: -0.604 GC content %: 43.062 | |
| Hvulgare_HORVU6Hr1G069120.40 HORVU6Hr1G069120.40 |
Low | No | 1971 | OG0047623 | Get ORF Coding potential... Type: noncoding Potential: -1.191 Folding energies... MFEI: -26.555 AMFE: -0.633 GC content %: 41.958 | |
| Hvulgare_HORVU6Hr1G069120.5 HORVU6Hr1G069120.5 |
High | No | 2815 | OG0047624 | Get ORF Coding potential... Type: noncoding Potential: -1.227 Folding energies... MFEI: -25.968 AMFE: -0.627 GC content %: 41.385 | |
| Hvulgare_HORVU6Hr1G069120.6 HORVU6Hr1G069120.6 |
Low | No | 3466 | OG0047625 | Get ORF Coding potential... Type: noncoding Potential: -1.243 Folding energies... MFEI: -25.415 AMFE: -0.632 GC content %: 40.219 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU6Hr1G069120.11 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm; LINE/Jockey; LINE/L2 | |
| Hvulgare_HORVU6Hr1G069120.40 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm; LINE/Jockey; LINE/L2 | |
| Hvulgare_HORVU6Hr1G069120.6 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm; LINE/Jockey; LINE/L2 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
