Hvulgare HORVU6Hr1G073080
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU6Hr1G073080 [ HORVU6Hr1G073080] |
chr6H | 507145574 | 507148929 | r1 | Hordeum vulgare (Phytozome 13) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU6Hr1G073080.1 HORVU6Hr1G073080.1 |
High | No | 787 | OG0193162 | Get ORF Coding potential... Type: noncoding Potential: -0.766 Folding energies... MFEI: -27.395 AMFE: -0.500 GC content %: 54.765 | |
| Hvulgare_HORVU6Hr1G073080.2 HORVU6Hr1G073080.2 |
High | No | 495 | OG0047702 | Get ORF Coding potential... Type: noncoding Potential: -0.663 Folding energies... MFEI: -24.020 AMFE: -0.553 GC content %: 43.434 | |
| Hvulgare_HORVU6Hr1G073080.3 HORVU6Hr1G073080.3 |
High | No | 567 | OG0047703 | Get ORF Coding potential... Type: noncoding Potential: -0.697 Folding energies... MFEI: -29.030 AMFE: -0.554 GC content %: 52.381 | |
| Hvulgare_HORVU6Hr1G073080.4 HORVU6Hr1G073080.4 |
High | No | 437 | OG0193163 | Get ORF Coding potential... Type: noncoding Potential: -0.631 Folding energies... MFEI: -24.691 AMFE: -0.562 GC content %: 43.936 | |
| Hvulgare_HORVU6Hr1G073080.5 HORVU6Hr1G073080.5 |
High | No | 694 | OG0193164 | Get ORF Coding potential... Type: noncoding Potential: -0.741 Folding energies... MFEI: -29.092 AMFE: -0.506 GC content %: 57.493 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
