Hvulgare HORVU6Hr1G074330
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU6Hr1G074330 [ HORVU6Hr1G074330] |
chr6H | 513638023 | 513650788 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU6Hr1G074330.1 HORVU6Hr1G074330.1 |
Low | No | 857 | OG0013195 | Get ORF Coding potential... Type: noncoding Potential: -0.814 Folding energies... MFEI: -32.835 AMFE: -0.565 GC content %: 58.110 | |
| Hvulgare_HORVU6Hr1G074330.10 HORVU6Hr1G074330.10 |
Low | No | 3004 | OG0047728 | Get ORF Coding potential... Type: noncoding Potential: -0.686 Folding energies... MFEI: -35.746 AMFE: -0.679 GC content %: 52.663 | |
| Hvulgare_HORVU6Hr1G074330.11 HORVU6Hr1G074330.11 |
Low | No | 1491 | OG0047729 | Get ORF Coding potential... Type: noncoding Potential: -0.843 Folding energies... MFEI: -34.064 AMFE: -0.660 GC content %: 51.576 | |
| Hvulgare_HORVU6Hr1G074330.12 HORVU6Hr1G074330.12 |
Low | No | 2485 | OG0047730 | Get ORF Coding potential... Type: noncoding Potential: -0.664 Folding energies... MFEI: -35.416 AMFE: -0.678 GC content %: 52.274 | |
| Hvulgare_HORVU6Hr1G074330.13 HORVU6Hr1G074330.13 |
Low | No | 1722 | OG0001435 | Get ORF Coding potential... Type: noncoding Potential: -0.771 Folding energies... MFEI: -31.347 AMFE: -0.623 GC content %: 50.348 | |
| Hvulgare_HORVU6Hr1G074330.15 HORVU6Hr1G074330.15 |
Low | No | 1435 | OG0047731 | Get ORF Coding potential... Type: noncoding Potential: -0.805 Folding energies... MFEI: -34.000 AMFE: -0.644 GC content %: 52.822 | |
| Hvulgare_HORVU6Hr1G074330.16 HORVU6Hr1G074330.16 |
Low | No | 1611 | OG0001435 | Get ORF Coding potential... Type: noncoding Potential: -0.768 Folding energies... MFEI: -31.608 AMFE: -0.617 GC content %: 51.210 | |
| Hvulgare_HORVU6Hr1G074330.17 HORVU6Hr1G074330.17 |
Low | No | 1292 | OG0013196 | Get ORF Coding potential... Type: noncoding Potential: -0.804 Folding energies... MFEI: -31.169 AMFE: -0.603 GC content %: 51.703 | |
| Hvulgare_HORVU6Hr1G074330.18 HORVU6Hr1G074330.18 |
Low | No | 2113 | OG0001081 | Get ORF Coding potential... Type: noncoding Potential: -0.643 Folding energies... MFEI: -37.047 AMFE: -0.683 GC content %: 54.236 | |
| Hvulgare_HORVU6Hr1G074330.19 HORVU6Hr1G074330.19 |
Low | No | 2264 | OG0001081 | Get ORF Coding potential... Type: noncoding Potential: -0.652 Folding energies... MFEI: -36.519 AMFE: -0.685 GC content %: 53.313 | |
| Hvulgare_HORVU6Hr1G074330.2 HORVU6Hr1G074330.2 |
Low | No | 2107 | OG0001081 | Get ORF Coding potential... Type: noncoding Potential: -0.643 Folding energies... MFEI: -36.156 AMFE: -0.668 GC content %: 54.153 | |
| Hvulgare_HORVU6Hr1G074330.21 HORVU6Hr1G074330.21 |
Low | No | 1444 | OG0001435 | Get ORF Coding potential... Type: noncoding Potential: -0.789 Folding energies... MFEI: -29.848 AMFE: -0.617 GC content %: 48.338 | |
| Hvulgare_HORVU6Hr1G074330.22 HORVU6Hr1G074330.22 |
Low | No | 1005 | OG0013196 | Get ORF Coding potential... Type: noncoding Potential: -0.643 Folding energies... MFEI: -30.478 AMFE: -0.608 GC content %: 50.149 | |
| Hvulgare_HORVU6Hr1G074330.23 HORVU6Hr1G074330.23 |
Low | No | 861 | OG0001435 | Get ORF Coding potential... Type: noncoding Potential: -0.795 Folding energies... MFEI: -30.360 AMFE: -0.598 GC content %: 50.755 | |
| Hvulgare_HORVU6Hr1G074330.24 HORVU6Hr1G074330.24 |
Low | No | 2055 | OG0001081 | Get ORF Coding potential... Type: noncoding Potential: -0.640 Folding energies... MFEI: -35.450 AMFE: -0.689 GC content %: 51.436 | |
| Hvulgare_HORVU6Hr1G074330.25 HORVU6Hr1G074330.25 |
Low | No | 2408 | OG0047732 | Get ORF Coding potential... Type: noncoding Potential: -0.041 Folding energies... MFEI: -35.266 AMFE: -0.689 GC content %: 51.204 | |
| Hvulgare_HORVU6Hr1G074330.26 HORVU6Hr1G074330.26 |
Low | No | 2125 | OG0047733 | Get ORF Coding potential... Type: noncoding Potential: -0.644 Folding energies... MFEI: -34.367 AMFE: -0.713 GC content %: 48.188 | |
| Hvulgare_HORVU6Hr1G074330.27 HORVU6Hr1G074330.27 |
Low | No | 1333 | OG0047734 | Get ORF Coding potential... Type: noncoding Potential: -0.779 Folding energies... MFEI: -29.070 AMFE: -0.636 GC content %: 45.686 | |
| Hvulgare_HORVU6Hr1G074330.3 HORVU6Hr1G074330.3 |
Low | No | 2001 | OG0001081 | Get ORF Coding potential... Type: noncoding Potential: -0.636 Folding energies... MFEI: -37.266 AMFE: -0.675 GC content %: 55.222 | |
| Hvulgare_HORVU6Hr1G074330.30 HORVU6Hr1G074330.30 |
Low | No | 959 | OG0047735 | Get ORF Coding potential... Type: noncoding Potential: -1.373 Folding energies... MFEI: -31.491 AMFE: -0.662 GC content %: 47.550 | |
| Hvulgare_HORVU6Hr1G074330.31 HORVU6Hr1G074330.31 |
Low | No | 814 | OG0001435 | Get ORF Coding potential... Type: noncoding Potential: -1.359 Folding energies... MFEI: -29.177 AMFE: -0.630 GC content %: 46.314 | |
| Hvulgare_HORVU6Hr1G074330.4 HORVU6Hr1G074330.4 |
Low | No | 2241 | OG0001081 | Get ORF Coding potential... Type: noncoding Potential: -0.532 Folding energies... MFEI: -36.573 AMFE: -0.686 GC content %: 53.324 | |
| Hvulgare_HORVU6Hr1G074330.5 HORVU6Hr1G074330.5 |
Low | No | 2170 | OG0001081 | Get ORF Coding potential... Type: noncoding Potential: -0.802 Folding energies... MFEI: -37.286 AMFE: -0.680 GC content %: 54.839 | |
| Hvulgare_HORVU6Hr1G074330.6 HORVU6Hr1G074330.6 |
Low | No | 1432 | OG0013195 | Get ORF Coding potential... Type: noncoding Potential: -0.846 Folding energies... MFEI: -36.613 AMFE: -0.643 GC content %: 56.913 | |
| Hvulgare_HORVU6Hr1G074330.7 HORVU6Hr1G074330.7 |
Low | No | 2350 | OG0047736 | Get ORF Coding potential... Type: noncoding Potential: -0.657 Folding energies... MFEI: -36.149 AMFE: -0.679 GC content %: 53.277 | |
| Hvulgare_HORVU6Hr1G074330.8 HORVU6Hr1G074330.8 |
Low | No | 1197 | OG0047737 | Get ORF Coding potential... Type: noncoding Potential: -0.922 Folding energies... MFEI: -36.341 AMFE: -0.626 GC content %: 58.062 | |
| Hvulgare_HORVU6Hr1G074330.9 HORVU6Hr1G074330.9 |
Low | No | 2039 | OG0001435 | Get ORF Coding potential... Type: noncoding Potential: -0.800 Folding energies... MFEI: -33.752 AMFE: -0.643 GC content %: 52.526 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU6Hr1G074330.6 | SwissProt | 2021-04-01 | Q9C9Z9 | 3.75e-8 |
| Hvulgare_HORVU6Hr1G074330.22 | RepBase (RepeatMasker) | 2014-01-31 | DNA/Sola; LINE/L1 | |
| Hvulgare_HORVU6Hr1G074330.25 | SwissProt | 2021-04-01 | Q9C9Z9 | 4.15e-9 |
| Hvulgare_HORVU6Hr1G074330.17 | RepBase (RepeatMasker) | 2014-01-31 | DNA/Sola; LINE/L1; LTR/Gypsy | |
| Hvulgare_HORVU6Hr1G074330.6 | RepBase (RepeatMasker) | 2014-01-31 | DNA/Sola; LTR/Gypsy | |
| Hvulgare_HORVU6Hr1G074330.18 | SwissProt | 2021-04-01 | Q9C9Z9 | 5.98e-8 |
| Hvulgare_HORVU6Hr1G074330.11 | RepBase (RepeatMasker) | 2014-01-31 | DNA/Sola; LTR/Gypsy | |
| Hvulgare_HORVU6Hr1G074330.3 | RepBase (RepeatMasker) | 2014-01-31 | DNA/Sola; LINE/L1; LTR/Gypsy | |
| Hvulgare_HORVU6Hr1G074330.11 | SwissProt | 2021-04-01 | Q9C9Z9 | 1.17e-7 |
| Hvulgare_HORVU6Hr1G074330.7 | SwissProt | 2021-04-01 | Q9C9Z9 | 8.47e-4 |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
