GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Hvulgare_HORVU6Hr1G076750 [ HORVU6Hr1G076750]	chr6H	526824016	526943034	r1	Hordeum vulgare (Phytozome 13)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Hvulgare_HORVU6Hr1G076750.26 HORVU6Hr1G076750.26	High	No	675	OG0047787		Get ORF Coding potential... Type: noncoding Potential: -0.390 Folding energies... MFEI: -25.156 AMFE: -0.634 GC content %: 39.704
Hvulgare_HORVU6Hr1G076750.27 HORVU6Hr1G076750.27	High	No	2353	OG0047788		Get ORF Coding potential... Type: noncoding Potential: -0.860 Folding energies... MFEI: -25.363 AMFE: -0.644 GC content %: 39.397
Hvulgare_HORVU6Hr1G076750.29 HORVU6Hr1G076750.29	High	No	554	OG0002954		Get ORF Coding potential... Type: noncoding Potential: -0.933 Folding energies... MFEI: -23.682 AMFE: -0.558 GC content %: 42.419
Hvulgare_HORVU6Hr1G076750.30 HORVU6Hr1G076750.30	High	No	509	OG0047789		Get ORF Coding potential... Type: noncoding Potential: -1.018 Folding energies... MFEI: -21.650 AMFE: -0.532 GC content %: 40.668

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).