Hvulgare HORVU6Hr1G079120
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU6Hr1G079120 [ HORVU6Hr1G079120] |
chr6H | 536767313 | 536771418 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU6Hr1G079120.12 HORVU6Hr1G079120.12 |
High | No | 2448 | OG0047836 | Get ORF Coding potential... Type: noncoding Potential: -1.293 Folding energies... MFEI: -25.255 AMFE: -0.670 GC content %: 37.704 | |
| Hvulgare_HORVU6Hr1G079120.14 HORVU6Hr1G079120.14 |
High | No | 2768 | OG0005989 | Get ORF Coding potential... Type: noncoding Potential: -1.302 Folding energies... MFEI: -28.645 AMFE: -0.667 GC content %: 42.955 | |
| Hvulgare_HORVU6Hr1G079120.15 HORVU6Hr1G079120.15 |
High | No | 2715 | OG0047837 | Get ORF Coding potential... Type: noncoding Potential: -1.160 Folding energies... MFEI: -25.510 AMFE: -0.675 GC content %: 37.790 | |
| Hvulgare_HORVU6Hr1G079120.17 HORVU6Hr1G079120.17 |
High | No | 2470 | OG0013211 | Get ORF Coding potential... Type: noncoding Potential: -1.290 Folding energies... MFEI: -28.344 AMFE: -0.648 GC content %: 43.765 | |
| Hvulgare_HORVU6Hr1G079120.18 HORVU6Hr1G079120.18 |
High | No | 2740 | OG0002157 | Get ORF Coding potential... Type: noncoding Potential: -1.301 Folding energies... MFEI: -28.912 AMFE: -0.673 GC content %: 42.956 | |
| Hvulgare_HORVU6Hr1G079120.19 HORVU6Hr1G079120.19 |
High | No | 3133 | OG0047838 | Get ORF Coding potential... Type: noncoding Potential: -1.257 Folding energies... MFEI: -27.938 AMFE: -0.646 GC content %: 43.217 | |
| Hvulgare_HORVU6Hr1G079120.21 HORVU6Hr1G079120.21 |
High | No | 2543 | OG0002157 | Get ORF Coding potential... Type: noncoding Potential: -1.293 Folding energies... MFEI: -25.541 AMFE: -0.680 GC content %: 37.554 | |
| Hvulgare_HORVU6Hr1G079120.22 HORVU6Hr1G079120.22 |
High | No | 2289 | OG0002157 | Get ORF Coding potential... Type: noncoding Potential: -1.281 Folding energies... MFEI: -26.479 AMFE: -0.690 GC content %: 38.357 | |
| Hvulgare_HORVU6Hr1G079120.24 HORVU6Hr1G079120.24 |
High | No | 2542 | OG0013212 | Get ORF Coding potential... Type: noncoding Potential: -1.293 Folding energies... MFEI: -28.171 AMFE: -0.646 GC content %: 43.627 | |
| Hvulgare_HORVU6Hr1G079120.29 HORVU6Hr1G079120.29 |
High | No | 2208 | OG0005989 | Get ORF Coding potential... Type: noncoding Potential: -1.276 Folding energies... MFEI: -26.658 AMFE: -0.693 GC content %: 38.451 | |
| Hvulgare_HORVU6Hr1G079120.3 HORVU6Hr1G079120.3 |
High | No | 2432 | OG0013213 | Get ORF Coding potential... Type: noncoding Potential: -1.288 Folding energies... MFEI: -28.421 AMFE: -0.647 GC content %: 43.956 | |
| Hvulgare_HORVU6Hr1G079120.30 HORVU6Hr1G079120.30 |
High | No | 1470 | OG0047839 | Get ORF Coding potential... Type: noncoding Potential: -1.215 Folding energies... MFEI: -24.857 AMFE: -0.640 GC content %: 38.844 | |
| Hvulgare_HORVU6Hr1G079120.32 HORVU6Hr1G079120.32 |
High | No | 2104 | OG0047840 | Get ORF Coding potential... Type: noncoding Potential: -1.287 Folding energies... MFEI: -25.207 AMFE: -0.652 GC content %: 38.641 | |
| Hvulgare_HORVU6Hr1G079120.33 HORVU6Hr1G079120.33 |
High | No | 2845 | OG0047841 | Get ORF Coding potential... Type: noncoding Potential: -1.248 Folding energies... MFEI: -24.819 AMFE: -0.653 GC content %: 38.032 | |
| Hvulgare_HORVU6Hr1G079120.36 HORVU6Hr1G079120.36 |
High | No | 2881 | OG0047842 | Get ORF Coding potential... Type: noncoding Potential: -1.249 Folding energies... MFEI: -25.068 AMFE: -0.659 GC content %: 38.042 | |
| Hvulgare_HORVU6Hr1G079120.37 HORVU6Hr1G079120.37 |
High | No | 2444 | OG0047843 | Get ORF Coding potential... Type: noncoding Potential: -1.288 Folding energies... MFEI: -26.084 AMFE: -0.688 GC content %: 37.930 | |
| Hvulgare_HORVU6Hr1G079120.39 HORVU6Hr1G079120.39 |
High | No | 3302 | OG0047844 | Get ORF Coding potential... Type: noncoding Potential: -1.262 Folding energies... MFEI: -28.574 AMFE: -0.672 GC content %: 42.520 | |
| Hvulgare_HORVU6Hr1G079120.4 HORVU6Hr1G079120.4 |
High | No | 2870 | OG0002157 | Get ORF Coding potential... Type: noncoding Potential: -1.306 Folding energies... MFEI: -28.265 AMFE: -0.668 GC content %: 42.334 | |
| Hvulgare_HORVU6Hr1G079120.44 HORVU6Hr1G079120.44 |
High | No | 2014 | OG0047845 | Get ORF Coding potential... Type: noncoding Potential: -1.286 Folding energies... MFEI: -24.506 AMFE: -0.638 GC content %: 38.381 | |
| Hvulgare_HORVU6Hr1G079120.45 HORVU6Hr1G079120.45 |
High | No | 2256 | OG0013213 | Get ORF Coding potential... Type: noncoding Potential: -1.279 Folding energies... MFEI: -29.356 AMFE: -0.651 GC content %: 45.124 | |
| Hvulgare_HORVU6Hr1G079120.48 HORVU6Hr1G079120.48 |
High | No | 2469 | OG0047846 | Get ORF Coding potential... Type: noncoding Potential: -1.289 Folding energies... MFEI: -29.745 AMFE: -0.681 GC content %: 43.702 | |
| Hvulgare_HORVU6Hr1G079120.5 HORVU6Hr1G079120.5 |
High | No | 2211 | OG0013211 | Get ORF Coding potential... Type: noncoding Potential: -1.276 Folding energies... MFEI: -24.630 AMFE: -0.650 GC content %: 37.901 | |
| Hvulgare_HORVU6Hr1G079120.50 HORVU6Hr1G079120.50 |
High | No | 2110 | OG0047847 | Get ORF Coding potential... Type: noncoding Potential: -1.213 Folding energies... MFEI: -29.346 AMFE: -0.665 GC content %: 44.123 | |
| Hvulgare_HORVU6Hr1G079120.6 HORVU6Hr1G079120.6 |
High | No | 2786 | OG0002157 | Get ORF Coding potential... Type: noncoding Potential: -1.302 Folding energies... MFEI: -28.819 AMFE: -0.668 GC content %: 43.144 | |
| Hvulgare_HORVU6Hr1G079120.8 HORVU6Hr1G079120.8 |
High | No | 2474 | OG0005989 | Get ORF Coding potential... Type: noncoding Potential: -1.290 Folding energies... MFEI: -25.687 AMFE: -0.685 GC content %: 37.510 | |
| Hvulgare_HORVU6Hr1G079120.9 HORVU6Hr1G079120.9 |
High | No | 2268 | OG0013212 | Get ORF Coding potential... Type: noncoding Potential: -1.279 Folding energies... MFEI: -24.824 AMFE: -0.653 GC content %: 38.007 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
