Hvulgare HORVU6Hr1G081020
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU6Hr1G081020 [ HORVU6Hr1G081020] |
chr6H | 544093660 | 544096933 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU6Hr1G081020.11 HORVU6Hr1G081020.11 |
Low | No | 922 | OG0003347 | Get ORF Coding potential... Type: noncoding Potential: -0.999 Folding energies... MFEI: -33.753 AMFE: -0.652 GC content %: 51.735 | |
| Hvulgare_HORVU6Hr1G081020.12 HORVU6Hr1G081020.12 |
Low | No | 927 | OG0003347 | Get ORF Coding potential... Type: noncoding Potential: -1.000 Folding energies... MFEI: -34.423 AMFE: -0.661 GC content %: 52.104 | |
| Hvulgare_HORVU6Hr1G081020.14 HORVU6Hr1G081020.14 |
Low | No | 687 | OG0003347 | Get ORF Coding potential... Type: noncoding Potential: -1.308 Folding energies... MFEI: -31.790 AMFE: -0.650 GC content %: 48.908 | |
| Hvulgare_HORVU6Hr1G081020.15 HORVU6Hr1G081020.15 |
Low | No | 688 | OG0047883 | Get ORF Coding potential... Type: noncoding Potential: -1.308 Folding energies... MFEI: -31.512 AMFE: -0.638 GC content %: 49.419 | |
| Hvulgare_HORVU6Hr1G081020.17 HORVU6Hr1G081020.17 |
High | No | 1623 | OG0047884 | Get ORF Coding potential... Type: noncoding Potential: -1.031 Folding energies... MFEI: -34.855 AMFE: -0.707 GC content %: 49.291 | |
| Hvulgare_HORVU6Hr1G081020.18 HORVU6Hr1G081020.18 |
High | No | 1357 | OG0047885 | Get ORF Coding potential... Type: noncoding Potential: -1.004 Folding energies... MFEI: -35.608 AMFE: -0.696 GC content %: 51.142 | |
| Hvulgare_HORVU6Hr1G081020.19 HORVU6Hr1G081020.19 |
High | No | 602 | OG0047886 | Get ORF Coding potential... Type: noncoding Potential: -0.812 Folding energies... MFEI: -33.223 AMFE: -0.660 GC content %: 50.332 | |
| Hvulgare_HORVU6Hr1G081020.2 HORVU6Hr1G081020.2 |
Low | No | 975 | OG0047887 | Get ORF Coding potential... Type: noncoding Potential: -1.167 Folding energies... MFEI: -27.723 AMFE: -0.629 GC content %: 44.103 | |
| Hvulgare_HORVU6Hr1G081020.3 HORVU6Hr1G081020.3 |
Low | No | 769 | OG0047888 | Get ORF Coding potential... Type: noncoding Potential: -1.316 Folding energies... MFEI: -31.378 AMFE: -0.643 GC content %: 48.765 | |
| Hvulgare_HORVU6Hr1G081020.4 HORVU6Hr1G081020.4 |
Low | No | 982 | OG0047889 | Get ORF Coding potential... Type: noncoding Potential: -1.012 Folding energies... MFEI: -34.572 AMFE: -0.666 GC content %: 51.935 | |
| Hvulgare_HORVU6Hr1G081020.5 HORVU6Hr1G081020.5 |
Low | No | 679 | OG0005991 | Get ORF Coding potential... Type: noncoding Potential: -1.078 Folding energies... MFEI: -28.159 AMFE: -0.653 GC content %: 43.152 | |
| Hvulgare_HORVU6Hr1G081020.6 HORVU6Hr1G081020.6 |
Low | No | 878 | OG0005991 | Get ORF Coding potential... Type: noncoding Potential: -1.159 Folding energies... MFEI: -28.326 AMFE: -0.626 GC content %: 45.216 | |
| Hvulgare_HORVU6Hr1G081020.7 HORVU6Hr1G081020.7 |
Low | No | 810 | OG0005991 | Get ORF Coding potential... Type: noncoding Potential: -0.971 Folding energies... MFEI: -29.951 AMFE: -0.638 GC content %: 46.914 | |
| Hvulgare_HORVU6Hr1G081020.8 HORVU6Hr1G081020.8 |
Low | No | 982 | OG0003347 | Get ORF Coding potential... Type: noncoding Potential: -1.012 Folding energies... MFEI: -33.106 AMFE: -0.649 GC content %: 51.018 | |
| Hvulgare_HORVU6Hr1G081020.9 HORVU6Hr1G081020.9 |
Low | No | 927 | OG0047890 | Get ORF Coding potential... Type: noncoding Potential: -1.157 Folding energies... MFEI: -27.832 AMFE: -0.614 GC content %: 45.307 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU6Hr1G081020.5 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Hvulgare_HORVU6Hr1G081020.14 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Hvulgare_HORVU6Hr1G081020.6 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Hvulgare_HORVU6Hr1G081020.15 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Hvulgare_HORVU6Hr1G081020.7 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Hvulgare_HORVU6Hr1G081020.2 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Hvulgare_HORVU6Hr1G081020.8 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Hvulgare_HORVU6Hr1G081020.3 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Hvulgare_HORVU6Hr1G081020.11 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Hvulgare_HORVU6Hr1G081020.9 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
