Hvulgare HORVU6Hr1G083570
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU6Hr1G083570 [ HORVU6Hr1G083570] |
chr6H | 552026950 | 552037142 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU6Hr1G083570.1 HORVU6Hr1G083570.1 |
High | No | 1865 | OG0003348 | Get ORF Coding potential... Type: noncoding Potential: -0.717 Folding energies... MFEI: -30.960 AMFE: -0.650 GC content %: 47.614 | |
| Hvulgare_HORVU6Hr1G083570.11 HORVU6Hr1G083570.11 |
High | No | 1752 | OG0013220 | Get ORF Coding potential... Type: noncoding Potential: -0.983 Folding energies... MFEI: -31.587 AMFE: -0.651 GC content %: 48.516 | |
| Hvulgare_HORVU6Hr1G083570.12 HORVU6Hr1G083570.12 |
High | No | 1473 | OG0047942 | Get ORF Coding potential... Type: noncoding Potential: -1.006 Folding energies... MFEI: -32.335 AMFE: -0.649 GC content %: 49.830 | |
| Hvulgare_HORVU6Hr1G083570.13 HORVU6Hr1G083570.13 |
High | No | 1403 | OG0047943 | Get ORF Coding potential... Type: noncoding Potential: -1.068 Folding energies... MFEI: -32.994 AMFE: -0.658 GC content %: 50.107 | |
| Hvulgare_HORVU6Hr1G083570.14 HORVU6Hr1G083570.14 |
High | No | 1175 | OG0013220 | Get ORF Coding potential... Type: noncoding Potential: -1.055 Folding energies... MFEI: -30.911 AMFE: -0.643 GC content %: 48.085 | |
| Hvulgare_HORVU6Hr1G083570.2 HORVU6Hr1G083570.2 |
High | No | 1780 | OG0013221 | Get ORF Coding potential... Type: noncoding Potential: -0.710 Folding energies... MFEI: -32.551 AMFE: -0.658 GC content %: 49.438 | |
| Hvulgare_HORVU6Hr1G083570.3 HORVU6Hr1G083570.3 |
High | No | 2027 | OG0003348 | Get ORF Coding potential... Type: noncoding Potential: -0.728 Folding energies... MFEI: -31.431 AMFE: -0.656 GC content %: 47.903 | |
| Hvulgare_HORVU6Hr1G083570.4 HORVU6Hr1G083570.4 |
High | No | 1594 | OG0013221 | Get ORF Coding potential... Type: noncoding Potential: -0.693 Folding energies... MFEI: -32.102 AMFE: -0.649 GC content %: 49.498 | |
| Hvulgare_HORVU6Hr1G083570.5 HORVU6Hr1G083570.5 |
High | No | 1845 | OG0047944 | Get ORF Coding potential... Type: noncoding Potential: -0.757 Folding energies... MFEI: -32.743 AMFE: -0.662 GC content %: 49.431 | |
| Hvulgare_HORVU6Hr1G083570.6 HORVU6Hr1G083570.6 |
High | No | 1856 | OG0003348 | Get ORF Coding potential... Type: noncoding Potential: -0.716 Folding energies... MFEI: -31.735 AMFE: -0.652 GC content %: 48.653 | |
| Hvulgare_HORVU6Hr1G083570.8 HORVU6Hr1G083570.8 |
High | No | 1854 | OG0003348 | Get ORF Coding potential... Type: noncoding Potential: -0.882 Folding energies... MFEI: -31.570 AMFE: -0.654 GC content %: 48.274 | |
| Hvulgare_HORVU6Hr1G083570.9 HORVU6Hr1G083570.9 |
High | No | 1605 | OG0047945 | Get ORF Coding potential... Type: noncoding Potential: -0.694 Folding energies... MFEI: -32.804 AMFE: -0.656 GC content %: 49.969 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
