GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Hvulgare_HORVU6Hr1G090830 [ HORVU6Hr1G090830]	chr6H	573638672	573660137	r1	Hordeum vulgare (Phytozome 13)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Hvulgare_HORVU6Hr1G090830.11 HORVU6Hr1G090830.11	High	No	420	OG0048112		Get ORF Coding potential... Type: noncoding Potential: -0.947 Folding energies... MFEI: -22.238 AMFE: -0.553 GC content %: 40.238
Hvulgare_HORVU6Hr1G090830.12 HORVU6Hr1G090830.12	High	No	1762	OG0048113		Get ORF Coding potential... Type: noncoding Potential: -0.935 Folding energies... MFEI: -25.778 AMFE: -0.611 GC content %: 42.168
Hvulgare_HORVU6Hr1G090830.7 HORVU6Hr1G090830.7	High	No	1259	OG0048114		Get ORF Coding potential... Type: noncoding Potential: -1.060 Folding energies... MFEI: -22.033 AMFE: -0.519 GC content %: 42.494
Hvulgare_HORVU6Hr1G090830.8 HORVU6Hr1G090830.8	High	No	688	OG0048115		Get ORF Coding potential... Type: noncoding Potential: -1.027 Folding energies... MFEI: -27.718 AMFE: -0.561 GC content %: 49.419

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).