GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Hvulgare_HORVU7Hr1G000120 [ HORVU7Hr1G000120]	chr7H	171756	176849	r1	Hordeum vulgare (Phytozome 13)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Hvulgare_HORVU7Hr1G000120.13 HORVU7Hr1G000120.13	High	No	772	OG0005995		Get ORF Coding potential... Type: noncoding Potential: -0.563 Folding energies... MFEI: -27.876 AMFE: -0.640 GC content %: 43.523
Hvulgare_HORVU7Hr1G000120.22 HORVU7Hr1G000120.22	High	No	666	OG0005995		Get ORF Coding potential... Type: noncoding Potential: -0.693 Folding energies... MFEI: -29.129 AMFE: -0.671 GC content %: 43.393
Hvulgare_HORVU7Hr1G000120.27 HORVU7Hr1G000120.27	High	No	904	OG0005995		Get ORF Coding potential... Type: noncoding Potential: -0.769 Folding energies... MFEI: -26.759 AMFE: -0.611 GC content %: 43.805

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).