Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Hvulgare_HORVU7Hr1G017650 [ HORVU7Hr1G017650] |
chr7H | 22475854 | 22480447 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Hvulgare_HORVU7Hr1G017650.1 HORVU7Hr1G017650.1 |
Low | No | 618 | OG0048401 | Get ORF Coding potential... Type: noncoding Potential: -1.159 Folding energies... MFEI: -26.521 AMFE: -0.664 GC content %: 39.968 | |
Hvulgare_HORVU7Hr1G017650.4 HORVU7Hr1G017650.4 |
Low | No | 269 | OG0193213 | Get ORF Coding potential... Type: noncoding Potential: -0.293 Folding energies... MFEI: -28.587 AMFE: -0.636 GC content %: 44.981 | |
Hvulgare_HORVU7Hr1G017650.7 HORVU7Hr1G017650.7 |
Low | No | 2342 | OG0048402 | Get ORF Coding potential... Type: noncoding Potential: -0.143 Folding energies... MFEI: -28.194 AMFE: -0.678 GC content %: 41.588 | |
Hvulgare_HORVU7Hr1G017650.8 HORVU7Hr1G017650.8 |
High | No | 419 | OG0048403 | Get ORF Coding potential... Type: noncoding Potential: -1.010 Folding energies... MFEI: -29.809 AMFE: -0.453 GC content %: 65.871 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Hvulgare_HORVU7Hr1G017650.4 | SwissProt | 2021-04-01 | Q3EDD7 | 7.12e-16 |
Hvulgare_HORVU7Hr1G017650.7 | SwissProt | 2021-04-01 | Q3EDD7 | 1.99e-17 |
Hvulgare_HORVU7Hr1G017650.1 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway | |
Hvulgare_HORVU7Hr1G017650.7 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm; DNA/PIF-Harbinger? |