Hvulgare HORVU7Hr1G023800
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU7Hr1G023800 [ HORVU7Hr1G023800] |
chr7H | 37332628 | 37405418 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU7Hr1G023800.1 HORVU7Hr1G023800.1 |
Low | No | 1393 | OG0013272 | Get ORF Coding potential... Type: noncoding Potential: -1.124 Folding energies... MFEI: -26.583 AMFE: -0.607 GC content %: 43.790 | |
| Hvulgare_HORVU7Hr1G023800.10 HORVU7Hr1G023800.10 |
High | No | 272 | OG0193224 | Get ORF Coding potential... Type: noncoding Potential: -0.881 Folding energies... MFEI: -16.875 AMFE: -0.396 GC content %: 42.647 | |
| Hvulgare_HORVU7Hr1G023800.11 HORVU7Hr1G023800.11 |
High | No | 252 | OG0193225 | Get ORF Coding potential... Type: noncoding Potential: -0.911 Folding energies... MFEI: -17.738 AMFE: -0.406 GC content %: 43.651 | |
| Hvulgare_HORVU7Hr1G023800.12 HORVU7Hr1G023800.12 |
High | No | 346 | OG0048527 | Get ORF Coding potential... Type: noncoding Potential: -1.019 Folding energies... MFEI: -21.503 AMFE: -0.503 GC content %: 42.775 | |
| Hvulgare_HORVU7Hr1G023800.3 HORVU7Hr1G023800.3 |
High | No | 428 | OG0013272 | Get ORF Coding potential... Type: noncoding Potential: -1.020 Folding energies... MFEI: -29.486 AMFE: -0.499 GC content %: 59.112 | |
| Hvulgare_HORVU7Hr1G023800.4 HORVU7Hr1G023800.4 |
Low | No | 1392 | OG0048528 | Get ORF Coding potential... Type: noncoding Potential: -1.319 Folding energies... MFEI: -27.751 AMFE: -0.691 GC content %: 40.158 | |
| Hvulgare_HORVU7Hr1G023800.7 HORVU7Hr1G023800.7 |
High | No | 776 | OG0048529 | Get ORF Coding potential... Type: noncoding Potential: -0.802 Folding energies... MFEI: -39.201 AMFE: -0.654 GC content %: 59.923 | |
| Hvulgare_HORVU7Hr1G023800.8 HORVU7Hr1G023800.8 |
High | No | 309 | OG0048530 | Get ORF Coding potential... Type: noncoding Potential: -1.050 Folding energies... MFEI: -39.644 AMFE: -0.622 GC content %: 63.754 | |
| Hvulgare_HORVU7Hr1G023800.9 HORVU7Hr1G023800.9 |
High | No | 220 | OG0193226 | Get ORF Coding potential... Type: noncoding Potential: -0.878 Folding energies... MFEI: -18.045 AMFE: -0.436 GC content %: 41.364 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU7Hr1G023800.4 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway; LTR/ERVK; SINE/tRNA | |
| Hvulgare_HORVU7Hr1G023800.1 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
