Hvulgare HORVU7Hr1G026240

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Hvulgare_HORVU7Hr1G026240
[ HORVU7Hr1G026240]
chr7H 44571360 44571630 r1 Hordeum vulgare (Phytozome 13)
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Hvulgare_HORVU7Hr1G026240.1
HORVU7Hr1G026240.1
Low No 271 OG0193229
Coding potential...
Type: noncoding Potential: -1.146
Folding energies...
MFEI: -56.015 AMFE: -0.703
GC content
%: 79.705


Matches to external databases
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The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Hvulgare_HORVU7Hr1G026240.1  SwissProt 2021-04-01 Q0WUG6 1.27e-8


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Hvulgare_HORVU7Hr1G026240.png