Hvulgare HORVU7Hr1G029960
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU7Hr1G029960 [ HORVU7Hr1G029960] |
chr7H | 57648749 | 57653258 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU7Hr1G029960.24 HORVU7Hr1G029960.24 |
High | No | 2809 | OG0048658 | Get ORF Coding potential... Type: noncoding Potential: -1.000 Folding energies... MFEI: -28.854 AMFE: -0.680 GC content %: 42.435 | |
| Hvulgare_HORVU7Hr1G029960.27 HORVU7Hr1G029960.27 |
High | No | 865 | OG0048659 | Get ORF Coding potential... Type: noncoding Potential: -1.151 Folding energies... MFEI: -29.491 AMFE: -0.678 GC content %: 43.468 | |
| Hvulgare_HORVU7Hr1G029960.29 HORVU7Hr1G029960.29 |
High | No | 1614 | OG0000644 | Get ORF Coding potential... Type: noncoding Potential: -0.915 Folding energies... MFEI: -27.800 AMFE: -0.672 GC content %: 41.388 | |
| Hvulgare_HORVU7Hr1G029960.30 HORVU7Hr1G029960.30 |
High | No | 1675 | OG0000644 | Get ORF Coding potential... Type: noncoding Potential: -1.307 Folding energies... MFEI: -28.197 AMFE: -0.689 GC content %: 40.896 | |
| Hvulgare_HORVU7Hr1G029960.31 HORVU7Hr1G029960.31 |
High | No | 2038 | OG0000644 | Get ORF Coding potential... Type: noncoding Potential: -1.083 Folding energies... MFEI: -28.126 AMFE: -0.691 GC content %: 40.677 | |
| Hvulgare_HORVU7Hr1G029960.32 HORVU7Hr1G029960.32 |
High | No | 618 | OG0013284 | Get ORF Coding potential... Type: noncoding Potential: -0.636 Folding energies... MFEI: -31.327 AMFE: -0.665 GC content %: 47.087 | |
| Hvulgare_HORVU7Hr1G029960.33 HORVU7Hr1G029960.33 |
High | No | 625 | OG0048660 | Get ORF Coding potential... Type: noncoding Potential: -0.774 Folding energies... MFEI: -32.336 AMFE: -0.685 GC content %: 47.200 | |
| Hvulgare_HORVU7Hr1G029960.34 HORVU7Hr1G029960.34 |
High | No | 1533 | OG0000644 | Get ORF Coding potential... Type: noncoding Potential: -0.924 Folding energies... MFEI: -28.447 AMFE: -0.682 GC content %: 41.683 | |
| Hvulgare_HORVU7Hr1G029960.36 HORVU7Hr1G029960.36 |
High | No | 817 | OG0048661 | Get ORF Coding potential... Type: noncoding Potential: -1.051 Folding energies... MFEI: -29.351 AMFE: -0.685 GC content %: 42.840 | |
| Hvulgare_HORVU7Hr1G029960.37 HORVU7Hr1G029960.37 |
High | No | 391 | OG0048662 | Get ORF Coding potential... Type: noncoding Potential: -1.025 Folding energies... MFEI: -29.284 AMFE: -0.599 GC content %: 48.849 | |
| Hvulgare_HORVU7Hr1G029960.38 HORVU7Hr1G029960.38 |
High | No | 1761 | OG0000644 | Get ORF Coding potential... Type: noncoding Potential: -1.204 Folding energies... MFEI: -27.433 AMFE: -0.670 GC content %: 40.943 | |
| Hvulgare_HORVU7Hr1G029960.40 HORVU7Hr1G029960.40 |
High | No | 1633 | OG0000644 | Get ORF Coding potential... Type: noncoding Potential: -0.911 Folding energies... MFEI: -28.977 AMFE: -0.684 GC content %: 42.376 | |
| Hvulgare_HORVU7Hr1G029960.41 HORVU7Hr1G029960.41 |
High | No | 715 | OG0013284 | Get ORF Coding potential... Type: noncoding Potential: -0.640 Folding energies... MFEI: -32.322 AMFE: -0.676 GC content %: 47.832 | |
| Hvulgare_HORVU7Hr1G029960.48 HORVU7Hr1G029960.48 |
High | No | 1451 | OG0000644 | Get ORF Coding potential... Type: noncoding Potential: -1.144 Folding energies... MFEI: -28.463 AMFE: -0.694 GC content %: 41.006 | |
| Hvulgare_HORVU7Hr1G029960.50 HORVU7Hr1G029960.50 |
High | No | 2091 | OG0000644 | Get ORF Coding potential... Type: noncoding Potential: -1.047 Folding energies... MFEI: -27.671 AMFE: -0.690 GC content %: 40.124 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
