Hvulgare HORVU7Hr1G035770
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU7Hr1G035770 [ HORVU7Hr1G035770] |
chr7H | 80108185 | 80111311 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU7Hr1G035770.10 HORVU7Hr1G035770.10 |
Low | No | 1521 | OG0048777 | Get ORF Coding potential... Type: noncoding Potential: -1.120 Folding energies... MFEI: -43.517 AMFE: -0.709 GC content %: 61.341 | |
| Hvulgare_HORVU7Hr1G035770.12 HORVU7Hr1G035770.12 |
Low | No | 979 | OG0001438 | Get ORF Coding potential... Type: noncoding Potential: -1.085 Folding energies... MFEI: -39.132 AMFE: -0.652 GC content %: 60.061 | |
| Hvulgare_HORVU7Hr1G035770.13 HORVU7Hr1G035770.13 |
Low | No | 1032 | OG0001438 | Get ORF Coding potential... Type: noncoding Potential: -1.090 Folding energies... MFEI: -39.603 AMFE: -0.655 GC content %: 60.465 | |
| Hvulgare_HORVU7Hr1G035770.15 HORVU7Hr1G035770.15 |
Low | No | 1004 | OG0001438 | Get ORF Coding potential... Type: noncoding Potential: -0.228 Folding energies... MFEI: -40.558 AMFE: -0.660 GC content %: 61.454 | |
| Hvulgare_HORVU7Hr1G035770.16 HORVU7Hr1G035770.16 |
Low | No | 1004 | OG0001438 | Get ORF Coding potential... Type: noncoding Potential: -0.916 Folding energies... MFEI: -40.090 AMFE: -0.651 GC content %: 61.554 | |
| Hvulgare_HORVU7Hr1G035770.18 HORVU7Hr1G035770.18 |
High | No | 373 | OG0048778 | Get ORF Coding potential... Type: noncoding Potential: -1.344 Folding energies... MFEI: -41.796 AMFE: -0.611 GC content %: 68.365 | |
| Hvulgare_HORVU7Hr1G035770.2 HORVU7Hr1G035770.2 |
Low | Yes | 2512 | OG0048779 | Get ORF Coding potential... Type: noncoding Potential: -1.108 Folding energies... MFEI: -39.319 AMFE: -0.708 GC content %: 55.573 | |
| Hvulgare_HORVU7Hr1G035770.7 HORVU7Hr1G035770.7 |
Low | No | 1171 | OG0001438 | Get ORF Coding potential... Type: noncoding Potential: -1.031 Folding energies... MFEI: -39.752 AMFE: -0.666 GC content %: 59.693 | |
| Hvulgare_HORVU7Hr1G035770.8 HORVU7Hr1G035770.8 |
Low | No | 1138 | OG0001438 | Get ORF Coding potential... Type: noncoding Potential: -0.932 Folding energies... MFEI: -41.046 AMFE: -0.670 GC content %: 61.248 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU7Hr1G035770.10 | SwissProt | 2021-04-01 | Q6Z6G5 | 5.5e-4 |
| Hvulgare_HORVU7Hr1G035770.8 | SwissProt | 2021-04-01 | Q6Z6G5 | 1.21e-10 |
| Hvulgare_HORVU7Hr1G035770.12 | SwissProt | 2021-04-01 | A2X9W8 | 4.73e-4 |
| Hvulgare_HORVU7Hr1G035770.2 | Rfam | 14.6 | MIR1122 | 0.0017 |
| Hvulgare_HORVU7Hr1G035770.13 | SwissProt | 2021-04-01 | A2X9W8 | 5.15e-4 |
| Hvulgare_HORVU7Hr1G035770.2 | RepBase (RepeatMasker) | 2014-01-31 | DNA | |
| Hvulgare_HORVU7Hr1G035770.15 | SwissProt | 2021-04-01 | Q6Z6G5 | 9.47e-11 |
| Hvulgare_HORVU7Hr1G035770.16 | SwissProt | 2021-04-01 | Q6Z6G5 | 2.13e-10 |
| Hvulgare_HORVU7Hr1G035770.7 | SwissProt | 2021-04-01 | Q6Z6G5 | 6.71e-10 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
