Hvulgare HORVU7Hr1G037090
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU7Hr1G037090 [ HORVU7Hr1G037090] |
chr7H | 87950593 | 87959641 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU7Hr1G037090.10 HORVU7Hr1G037090.10 |
Low | No | 3332 | OG0013298 | Get ORF Coding potential... Type: noncoding Potential: -0.203 Folding energies... MFEI: -31.125 AMFE: -0.690 GC content %: 45.108 | |
| Hvulgare_HORVU7Hr1G037090.11 HORVU7Hr1G037090.11 |
Low | No | 3077 | OG0048818 | Get ORF Coding potential... Type: noncoding Potential: -0.043 Folding energies... MFEI: -30.929 AMFE: -0.696 GC content %: 44.426 | |
| Hvulgare_HORVU7Hr1G037090.12 HORVU7Hr1G037090.12 |
Low | No | 2511 | OG0013298 | Get ORF Coding potential... Type: noncoding Potential: -0.193 Folding energies... MFEI: -29.709 AMFE: -0.711 GC content %: 41.776 | |
| Hvulgare_HORVU7Hr1G037090.17 HORVU7Hr1G037090.17 |
Low | No | 2399 | OG0048819 | Get ORF Coding potential... Type: noncoding Potential: -0.197 Folding energies... MFEI: -31.163 AMFE: -0.719 GC content %: 43.351 | |
| Hvulgare_HORVU7Hr1G037090.23 HORVU7Hr1G037090.23 |
Low | No | 202 | OG0048820 | Get ORF Coding potential... Type: noncoding Potential: -1.276 Folding energies... MFEI: -32.871 AMFE: -0.527 GC content %: 62.376 | |
| Hvulgare_HORVU7Hr1G037090.4 HORVU7Hr1G037090.4 |
Low | No | 3473 | OG0048821 | Get ORF Coding potential... Type: noncoding Potential: -0.349 Folding energies... MFEI: -31.039 AMFE: -0.701 GC content %: 44.256 | |
| Hvulgare_HORVU7Hr1G037090.6 HORVU7Hr1G037090.6 |
Low | No | 2894 | OG0048822 | Get ORF Coding potential... Type: noncoding Potential: -0.041 Folding energies... MFEI: -32.384 AMFE: -0.698 GC content %: 46.372 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU7Hr1G037090.11 | SwissProt | 2021-04-01 | P22195 | 4.92e-18 |
| Hvulgare_HORVU7Hr1G037090.6 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Hvulgare_HORVU7Hr1G037090.10 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm; LTR/ERVK | |
| Hvulgare_HORVU7Hr1G037090.12 | SwissProt | 2021-04-01 | Q9LVL2 | 7.91e-18 |
| Hvulgare_HORVU7Hr1G037090.11 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Hvulgare_HORVU7Hr1G037090.17 | SwissProt | 2021-04-01 | P22195 | 4.06e-18 |
| Hvulgare_HORVU7Hr1G037090.12 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm; LTR/ERVK | |
| Hvulgare_HORVU7Hr1G037090.23 | SwissProt | 2021-04-01 | Q5JK39 | 5.42e-6 |
| Hvulgare_HORVU7Hr1G037090.17 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Hvulgare_HORVU7Hr1G037090.4 | SwissProt | 2021-04-01 | P22195 | 5.73e-18 |
... further results
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
