Hvulgare HORVU7Hr1G042230
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU7Hr1G042230 [ HORVU7Hr1G042230] |
chr7H | 121492863 | 121497691 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU7Hr1G042230.1 HORVU7Hr1G042230.1 |
Low | No | 3117 | OG0048938 | Get ORF Coding potential... Type: noncoding Potential: -0.062 Folding energies... MFEI: -27.071 AMFE: -0.625 GC content %: 43.311 | |
| Hvulgare_HORVU7Hr1G042230.10 HORVU7Hr1G042230.10 |
Low | No | 307 | OG0016747 | Get ORF Coding potential... Type: noncoding Potential: -0.168 Folding energies... MFEI: -31.336 AMFE: -0.625 GC content %: 50.163 | |
| Hvulgare_HORVU7Hr1G042230.2 HORVU7Hr1G042230.2 |
Low | No | 3185 | OG0048939 | Get ORF Coding potential... Type: noncoding Potential: -0.092 Folding energies... MFEI: -26.741 AMFE: -0.618 GC content %: 43.297 | |
| Hvulgare_HORVU7Hr1G042230.3 HORVU7Hr1G042230.3 |
Low | No | 3405 | OG0048940 | Get ORF Coding potential... Type: noncoding Potential: -0.227 Folding energies... MFEI: -26.878 AMFE: -0.631 GC content %: 42.614 | |
| Hvulgare_HORVU7Hr1G042230.4 HORVU7Hr1G042230.4 |
Low | No | 2962 | OG0048941 | Get ORF Coding potential... Type: noncoding Potential: -0.077 Folding energies... MFEI: -28.113 AMFE: -0.648 GC content %: 43.383 | |
| Hvulgare_HORVU7Hr1G042230.5 HORVU7Hr1G042230.5 |
Low | No | 2245 | OG0016746 | Get ORF Coding potential... Type: noncoding Potential: -0.054 Folding energies... MFEI: -28.138 AMFE: -0.641 GC content %: 43.875 | |
| Hvulgare_HORVU7Hr1G042230.7 HORVU7Hr1G042230.7 |
Low | No | 220 | OG0193262 | Get ORF Coding potential... Type: noncoding Potential: -0.992 Folding energies... MFEI: -29.682 AMFE: -0.628 GC content %: 47.273 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU7Hr1G042230.4 | SwissProt | 2021-04-01 | D9HP27 | 6.94e-29 |
| Hvulgare_HORVU7Hr1G042230.5 | SwissProt | 2021-04-01 | D9HP27 | 1.1e-28 |
| Hvulgare_HORVU7Hr1G042230.1 | SwissProt | 2021-04-01 | D9HP27 | 1.11e-26 |
| Hvulgare_HORVU7Hr1G042230.7 | SwissProt | 2021-04-01 | D9HP27 | 2.26e-6 |
| Hvulgare_HORVU7Hr1G042230.10 | SwissProt | 2021-04-01 | D9HP27 | 8.37e-28 |
| Hvulgare_HORVU7Hr1G042230.2 | SwissProt | 2021-04-01 | D9HP27 | 1.27e-28 |
| Hvulgare_HORVU7Hr1G042230.3 | SwissProt | 2021-04-01 | D9HP27 | 1.23e-26 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
