Hvulgare HORVU7Hr1G042550
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU7Hr1G042550 [ HORVU7Hr1G042550] |
chr7H | 124224009 | 124239863 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU7Hr1G042550.12 HORVU7Hr1G042550.12 |
High | No | 1875 | OG0048950 | Get ORF Coding potential... Type: noncoding Potential: -1.117 Folding energies... MFEI: -25.947 AMFE: -0.647 GC content %: 40.107 | |
| Hvulgare_HORVU7Hr1G042550.13 HORVU7Hr1G042550.13 |
High | No | 1091 | OG0013305 | Get ORF Coding potential... Type: noncoding Potential: -0.955 Folding energies... MFEI: -26.324 AMFE: -0.634 GC content %: 41.522 | |
| Hvulgare_HORVU7Hr1G042550.14 HORVU7Hr1G042550.14 |
High | No | 1248 | OG0048951 | Get ORF Coding potential... Type: noncoding Potential: -0.991 Folding energies... MFEI: -26.931 AMFE: -0.649 GC content %: 41.506 | |
| Hvulgare_HORVU7Hr1G042550.16 HORVU7Hr1G042550.16 |
Low | No | 2166 | OG0048952 | Get ORF Coding potential... Type: noncoding Potential: -0.941 Folding energies... MFEI: -26.736 AMFE: -0.677 GC content %: 39.474 | |
| Hvulgare_HORVU7Hr1G042550.17 HORVU7Hr1G042550.17 |
High | No | 1262 | OG0006004 | Get ORF Coding potential... Type: noncoding Potential: -0.845 Folding energies... MFEI: -25.990 AMFE: -0.646 GC content %: 40.254 | |
| Hvulgare_HORVU7Hr1G042550.18 HORVU7Hr1G042550.18 |
Low | No | 1076 | OG0006004 | Get ORF Coding potential... Type: noncoding Potential: -0.954 Folding energies... MFEI: -26.766 AMFE: -0.646 GC content %: 41.450 | |
| Hvulgare_HORVU7Hr1G042550.19 HORVU7Hr1G042550.19 |
Low | No | 2583 | OG0048953 | Get ORF Coding potential... Type: noncoding Potential: -1.114 Folding energies... MFEI: -26.787 AMFE: -0.679 GC content %: 39.450 | |
| Hvulgare_HORVU7Hr1G042550.20 HORVU7Hr1G042550.20 |
High | No | 1447 | OG0048954 | Get ORF Coding potential... Type: noncoding Potential: -1.132 Folding energies... MFEI: -27.560 AMFE: -0.653 GC content %: 42.225 | |
| Hvulgare_HORVU7Hr1G042550.22 HORVU7Hr1G042550.22 |
High | No | 1142 | OG0013305 | Get ORF Coding potential... Type: noncoding Potential: -0.968 Folding energies... MFEI: -25.158 AMFE: -0.617 GC content %: 40.806 | |
| Hvulgare_HORVU7Hr1G042550.23 HORVU7Hr1G042550.23 |
High | No | 2277 | OG0048955 | Get ORF Coding potential... Type: noncoding Potential: -1.119 Folding energies... MFEI: -26.552 AMFE: -0.677 GC content %: 39.218 | |
| Hvulgare_HORVU7Hr1G042550.26 HORVU7Hr1G042550.26 |
High | No | 1275 | OG0006004 | Get ORF Coding potential... Type: noncoding Potential: -0.847 Folding energies... MFEI: -26.753 AMFE: -0.668 GC content %: 40.078 | |
| Hvulgare_HORVU7Hr1G042550.27 HORVU7Hr1G042550.27 |
High | No | 859 | OG0048956 | Get ORF Coding potential... Type: noncoding Potential: -0.977 Folding energies... MFEI: -24.296 AMFE: -0.607 GC content %: 40.047 | |
| Hvulgare_HORVU7Hr1G042550.28 HORVU7Hr1G042550.28 |
High | No | 804 | OG0048957 | Get ORF Coding potential... Type: noncoding Potential: -1.224 Folding energies... MFEI: -24.067 AMFE: -0.603 GC content %: 39.925 | |
| Hvulgare_HORVU7Hr1G042550.29 HORVU7Hr1G042550.29 |
High | No | 1114 | OG0048958 | Get ORF Coding potential... Type: noncoding Potential: -1.033 Folding energies... MFEI: -24.399 AMFE: -0.629 GC content %: 38.779 | |
| Hvulgare_HORVU7Hr1G042550.3 HORVU7Hr1G042550.3 |
High | No | 993 | OG0048959 | Get ORF Coding potential... Type: noncoding Potential: -1.007 Folding energies... MFEI: -25.358 AMFE: -0.616 GC content %: 41.188 | |
| Hvulgare_HORVU7Hr1G042550.30 HORVU7Hr1G042550.30 |
High | No | 549 | OG0048960 | Get ORF Coding potential... Type: noncoding Potential: -1.221 Folding energies... MFEI: -28.834 AMFE: -0.611 GC content %: 47.177 | |
| Hvulgare_HORVU7Hr1G042550.31 HORVU7Hr1G042550.31 |
High | No | 1111 | OG0048961 | Get ORF Coding potential... Type: noncoding Potential: -1.086 Folding energies... MFEI: -23.078 AMFE: -0.605 GC content %: 38.164 | |
| Hvulgare_HORVU7Hr1G042550.32 HORVU7Hr1G042550.32 |
High | No | 364 | OG0048962 | Get ORF Coding potential... Type: noncoding Potential: -0.770 Folding energies... MFEI: -27.418 AMFE: -0.601 GC content %: 45.604 | |
| Hvulgare_HORVU7Hr1G042550.4 HORVU7Hr1G042550.4 |
High | No | 1912 | OG0048963 | Get ORF Coding potential... Type: noncoding Potential: -1.087 Folding energies... MFEI: -25.617 AMFE: -0.636 GC content %: 40.272 | |
| Hvulgare_HORVU7Hr1G042550.5 HORVU7Hr1G042550.5 |
High | No | 2640 | OG0048964 | Get ORF Coding potential... Type: noncoding Potential: -1.143 Folding energies... MFEI: -24.909 AMFE: -0.649 GC content %: 38.409 | |
| Hvulgare_HORVU7Hr1G042550.6 HORVU7Hr1G042550.6 |
High | No | 1701 | OG0048965 | Get ORF Coding potential... Type: noncoding Potential: -1.104 Folding energies... MFEI: -24.574 AMFE: -0.612 GC content %: 40.153 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU7Hr1G042550.18 | RepBase (RepeatMasker) | 2014-01-31 | LINE/CR1 | |
| Hvulgare_HORVU7Hr1G042550.19 | RepBase (RepeatMasker) | 2014-01-31 | LINE/CR1 | |
| Hvulgare_HORVU7Hr1G042550.16 | RepBase (RepeatMasker) | 2014-01-31 | LINE/CR1; LTR/Gypsy |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
