Hvulgare HORVU7Hr1G042700
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU7Hr1G042700 [ HORVU7Hr1G042700] |
chr7H | 125109149 | 125119904 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU7Hr1G042700.11 HORVU7Hr1G042700.11 |
High | No | 1271 | OG0048969 | Get ORF Coding potential... Type: noncoding Potential: -1.296 Folding energies... MFEI: -26.900 AMFE: -0.663 GC content %: 40.598 | |
| Hvulgare_HORVU7Hr1G042700.13 HORVU7Hr1G042700.13 |
High | No | 1168 | OG0048970 | Get ORF Coding potential... Type: noncoding Potential: -1.290 Folding energies... MFEI: -25.771 AMFE: -0.640 GC content %: 40.240 | |
| Hvulgare_HORVU7Hr1G042700.14 HORVU7Hr1G042700.14 |
High | No | 1751 | OG0048971 | Get ORF Coding potential... Type: noncoding Potential: -1.317 Folding energies... MFEI: -25.026 AMFE: -0.634 GC content %: 39.463 | |
| Hvulgare_HORVU7Hr1G042700.15 HORVU7Hr1G042700.15 |
High | No | 1368 | OG0048972 | Get ORF Coding potential... Type: noncoding Potential: -1.191 Folding energies... MFEI: -25.409 AMFE: -0.643 GC content %: 39.547 | |
| Hvulgare_HORVU7Hr1G042700.17 HORVU7Hr1G042700.17 |
High | No | 1675 | OG0048973 | Get ORF Coding potential... Type: noncoding Potential: -1.332 Folding energies... MFEI: -26.155 AMFE: -0.654 GC content %: 40.000 | |
| Hvulgare_HORVU7Hr1G042700.23 HORVU7Hr1G042700.23 |
High | No | 1389 | OG0013307 | Get ORF Coding potential... Type: noncoding Potential: -1.265 Folding energies... MFEI: -25.853 AMFE: -0.653 GC content %: 39.597 | |
| Hvulgare_HORVU7Hr1G042700.26 HORVU7Hr1G042700.26 |
High | No | 1122 | OG0048974 | Get ORF Coding potential... Type: noncoding Potential: -1.227 Folding energies... MFEI: -27.540 AMFE: -0.662 GC content %: 41.622 | |
| Hvulgare_HORVU7Hr1G042700.3 HORVU7Hr1G042700.3 |
High | No | 861 | OG0048975 | Get ORF Coding potential... Type: noncoding Potential: -1.220 Folding energies... MFEI: -26.678 AMFE: -0.622 GC content %: 42.857 | |
| Hvulgare_HORVU7Hr1G042700.30 HORVU7Hr1G042700.30 |
High | No | 1236 | OG0048976 | Get ORF Coding potential... Type: noncoding Potential: -0.925 Folding energies... MFEI: -27.427 AMFE: -0.640 GC content %: 42.880 | |
| Hvulgare_HORVU7Hr1G042700.31 HORVU7Hr1G042700.31 |
High | No | 1781 | OG0048977 | Get ORF Coding potential... Type: noncoding Potential: -0.984 Folding energies... MFEI: -26.592 AMFE: -0.649 GC content %: 40.988 | |
| Hvulgare_HORVU7Hr1G042700.35 HORVU7Hr1G042700.35 |
High | No | 398 | OG0048978 | Get ORF Coding potential... Type: noncoding Potential: -1.132 Folding energies... MFEI: -23.719 AMFE: -0.572 GC content %: 41.457 | |
| Hvulgare_HORVU7Hr1G042700.36 HORVU7Hr1G042700.36 |
High | No | 985 | OG0013307 | Get ORF Coding potential... Type: noncoding Potential: -1.191 Folding energies... MFEI: -23.949 AMFE: -0.606 GC content %: 39.492 | |
| Hvulgare_HORVU7Hr1G042700.37 HORVU7Hr1G042700.37 |
Low | No | 1415 | OG0048979 | Get ORF Coding potential... Type: noncoding Potential: -1.137 Folding energies... MFEI: -25.880 AMFE: -0.642 GC content %: 40.283 | |
| Hvulgare_HORVU7Hr1G042700.4 HORVU7Hr1G042700.4 |
High | No | 1116 | OG0048980 | Get ORF Coding potential... Type: noncoding Potential: -0.843 Folding energies... MFEI: -25.573 AMFE: -0.605 GC content %: 42.294 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU7Hr1G042700.37 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
