Hvulgare HORVU7Hr1G043920
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU7Hr1G043920 [ HORVU7Hr1G043920] |
chr7H | 135459362 | 135461368 | r1 | Hordeum vulgare (Phytozome 13) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU7Hr1G043920.1 HORVU7Hr1G043920.1 |
High | No | 1451 | OG0049000 | Get ORF Coding potential... Type: noncoding Potential: -1.157 Folding energies... MFEI: -34.886 AMFE: -0.677 GC content %: 51.551 | |
| Hvulgare_HORVU7Hr1G043920.10 HORVU7Hr1G043920.10 |
High | No | 1520 | OG0049001 | Get ORF Coding potential... Type: noncoding Potential: -1.162 Folding energies... MFEI: -33.974 AMFE: -0.675 GC content %: 50.329 | |
| Hvulgare_HORVU7Hr1G043920.11 HORVU7Hr1G043920.11 |
High | No | 1187 | OG0049002 | Get ORF Coding potential... Type: noncoding Potential: -1.110 Folding energies... MFEI: -38.163 AMFE: -0.689 GC content %: 55.350 | |
| Hvulgare_HORVU7Hr1G043920.12 HORVU7Hr1G043920.12 |
High | No | 970 | OG0049003 | Get ORF Coding potential... Type: noncoding Potential: -1.154 Folding energies... MFEI: -37.124 AMFE: -0.666 GC content %: 55.773 | |
| Hvulgare_HORVU7Hr1G043920.2 HORVU7Hr1G043920.2 |
High | No | 1562 | OG0049004 | Get ORF Coding potential... Type: noncoding Potential: -1.181 Folding energies... MFEI: -34.552 AMFE: -0.690 GC content %: 50.064 | |
| Hvulgare_HORVU7Hr1G043920.3 HORVU7Hr1G043920.3 |
High | No | 1640 | OG0013308 | Get ORF Coding potential... Type: noncoding Potential: -1.283 Folding energies... MFEI: -33.470 AMFE: -0.682 GC content %: 49.085 | |
| Hvulgare_HORVU7Hr1G043920.4 HORVU7Hr1G043920.4 |
High | No | 1589 | OG0049005 | Get ORF Coding potential... Type: noncoding Potential: -0.912 Folding energies... MFEI: -34.846 AMFE: -0.685 GC content %: 50.850 | |
| Hvulgare_HORVU7Hr1G043920.5 HORVU7Hr1G043920.5 |
High | No | 1667 | OG0013308 | Get ORF Coding potential... Type: noncoding Potential: -0.916 Folding energies... MFEI: -33.899 AMFE: -0.680 GC content %: 49.850 | |
| Hvulgare_HORVU7Hr1G043920.6 HORVU7Hr1G043920.6 |
High | No | 716 | OG0049006 | Get ORF Coding potential... Type: noncoding Potential: -1.086 Folding energies... MFEI: -29.260 AMFE: -0.653 GC content %: 44.832 | |
| Hvulgare_HORVU7Hr1G043920.7 HORVU7Hr1G043920.7 |
High | No | 1179 | OG0049007 | Get ORF Coding potential... Type: noncoding Potential: -1.125 Folding energies... MFEI: -37.184 AMFE: -0.686 GC content %: 54.198 | |
| Hvulgare_HORVU7Hr1G043920.8 HORVU7Hr1G043920.8 |
High | No | 1299 | OG0013309 | Get ORF Coding potential... Type: noncoding Potential: -1.172 Folding energies... MFEI: -36.574 AMFE: -0.683 GC content %: 53.580 | |
| Hvulgare_HORVU7Hr1G043920.9 HORVU7Hr1G043920.9 |
High | No | 1297 | OG0013309 | Get ORF Coding potential... Type: noncoding Potential: -1.172 Folding energies... MFEI: -36.631 AMFE: -0.684 GC content %: 53.585 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
