Hvulgare HORVU7Hr1G044470
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU7Hr1G044470 [ HORVU7Hr1G044470] |
chr7H | 138727029 | 138732633 | r1 | Hordeum vulgare (Phytozome 13) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU7Hr1G044470.1 HORVU7Hr1G044470.1 |
High | No | 680 | OG0049016 | Get ORF Coding potential... Type: noncoding Potential: -1.031 Folding energies... MFEI: -35.353 AMFE: -0.677 GC content %: 52.206 | |
| Hvulgare_HORVU7Hr1G044470.10 HORVU7Hr1G044470.10 |
High | No | 681 | OG0002163 | Get ORF Coding potential... Type: noncoding Potential: -0.930 Folding energies... MFEI: -34.449 AMFE: -0.670 GC content %: 51.395 | |
| Hvulgare_HORVU7Hr1G044470.11 HORVU7Hr1G044470.11 |
High | No | 1097 | OG0002163 | Get ORF Coding potential... Type: noncoding Potential: -1.028 Folding energies... MFEI: -28.496 AMFE: -0.599 GC content %: 47.584 | |
| Hvulgare_HORVU7Hr1G044470.12 HORVU7Hr1G044470.12 |
High | No | 888 | OG0049017 | Get ORF Coding potential... Type: noncoding Potential: -1.195 Folding energies... MFEI: -29.291 AMFE: -0.613 GC content %: 47.748 | |
| Hvulgare_HORVU7Hr1G044470.13 HORVU7Hr1G044470.13 |
High | No | 696 | OG0049018 | Get ORF Coding potential... Type: noncoding Potential: -1.248 Folding energies... MFEI: -30.000 AMFE: -0.607 GC content %: 49.425 | |
| Hvulgare_HORVU7Hr1G044470.14 HORVU7Hr1G044470.14 |
High | No | 506 | OG0049019 | Get ORF Coding potential... Type: noncoding Potential: -0.855 Folding energies... MFEI: -26.858 AMFE: -0.615 GC content %: 43.676 | |
| Hvulgare_HORVU7Hr1G044470.2 HORVU7Hr1G044470.2 |
High | No | 782 | OG0049020 | Get ORF Coding potential... Type: noncoding Potential: -1.176 Folding energies... MFEI: -32.110 AMFE: -0.642 GC content %: 50.000 | |
| Hvulgare_HORVU7Hr1G044470.3 HORVU7Hr1G044470.3 |
High | No | 1036 | OG0006005 | Get ORF Coding potential... Type: noncoding Potential: -1.018 Folding energies... MFEI: -30.714 AMFE: -0.642 GC content %: 47.876 | |
| Hvulgare_HORVU7Hr1G044470.4 HORVU7Hr1G044470.4 |
High | No | 1036 | OG0006005 | Get ORF Coding potential... Type: noncoding Potential: -1.018 Folding energies... MFEI: -30.434 AMFE: -0.637 GC content %: 47.780 | |
| Hvulgare_HORVU7Hr1G044470.5 HORVU7Hr1G044470.5 |
High | No | 878 | OG0006005 | Get ORF Coding potential... Type: noncoding Potential: -0.996 Folding energies... MFEI: -32.358 AMFE: -0.672 GC content %: 48.178 | |
| Hvulgare_HORVU7Hr1G044470.6 HORVU7Hr1G044470.6 |
High | No | 888 | OG0049021 | Get ORF Coding potential... Type: noncoding Potential: -0.989 Folding energies... MFEI: -31.092 AMFE: -0.630 GC content %: 49.324 | |
| Hvulgare_HORVU7Hr1G044470.7 HORVU7Hr1G044470.7 |
High | No | 1082 | OG0002163 | Get ORF Coding potential... Type: noncoding Potential: -1.026 Folding energies... MFEI: -28.983 AMFE: -0.607 GC content %: 47.782 | |
| Hvulgare_HORVU7Hr1G044470.8 HORVU7Hr1G044470.8 |
High | No | 1065 | OG0002163 | Get ORF Coding potential... Type: noncoding Potential: -1.041 Folding energies... MFEI: -30.883 AMFE: -0.634 GC content %: 48.732 | |
| Hvulgare_HORVU7Hr1G044470.9 HORVU7Hr1G044470.9 |
High | No | 1058 | OG0002163 | Get ORF Coding potential... Type: noncoding Potential: -1.039 Folding energies... MFEI: -31.144 AMFE: -0.639 GC content %: 48.771 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
