Hvulgare HORVU7Hr1G045430
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU7Hr1G045430 [ HORVU7Hr1G045430] |
chr7H | 144113596 | 144134781 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU7Hr1G045430.10 HORVU7Hr1G045430.10 |
High | No | 1011 | OG0003359 | Get ORF Coding potential... Type: noncoding Potential: -0.707 Folding energies... MFEI: -31.899 AMFE: -0.661 GC content %: 48.269 | |
| Hvulgare_HORVU7Hr1G045430.11 HORVU7Hr1G045430.11 |
Low | No | 1129 | OG0003359 | Get ORF Coding potential... Type: noncoding Potential: -0.579 Folding energies... MFEI: -30.345 AMFE: -0.665 GC content %: 45.616 | |
| Hvulgare_HORVU7Hr1G045430.12 HORVU7Hr1G045430.12 |
Low | No | 1169 | OG0003359 | Get ORF Coding potential... Type: noncoding Potential: -0.612 Folding energies... MFEI: -28.255 AMFE: -0.662 GC content %: 42.686 | |
| Hvulgare_HORVU7Hr1G045430.13 HORVU7Hr1G045430.13 |
High | No | 1170 | OG0003359 | Get ORF Coding potential... Type: noncoding Potential: -0.726 Folding energies... MFEI: -28.034 AMFE: -0.656 GC content %: 42.735 | |
| Hvulgare_HORVU7Hr1G045430.14 HORVU7Hr1G045430.14 |
High | No | 385 | OG0049040 | Get ORF Coding potential... Type: noncoding Potential: -0.667 Folding energies... MFEI: -27.325 AMFE: -0.598 GC content %: 45.714 | |
| Hvulgare_HORVU7Hr1G045430.15 HORVU7Hr1G045430.15 |
Low | Yes | 3572 | OG0049041 | Get ORF Coding potential... Type: noncoding Potential: -1.136 Folding energies... MFEI: -29.384 AMFE: -0.745 GC content %: 39.418 | |
| Hvulgare_HORVU7Hr1G045430.8 HORVU7Hr1G045430.8 |
High | No | 448 | OG0049042 | Get ORF Coding potential... Type: noncoding Potential: -0.616 Folding energies... MFEI: -23.237 AMFE: -0.578 GC content %: 40.179 | |
| Hvulgare_HORVU7Hr1G045430.9 HORVU7Hr1G045430.9 |
Low | No | 2361 | OG0049043 | Get ORF Coding potential... Type: noncoding Potential: -1.053 Folding energies... MFEI: -24.532 AMFE: -0.670 GC content %: 36.637 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU7Hr1G045430.11 | SwissProt | 2021-04-01 | Q6DG03 | 2.76e-4 |
| Hvulgare_HORVU7Hr1G045430.12 | SwissProt | 2021-04-01 | Q6DG03 | 1.73e-4 |
| Hvulgare_HORVU7Hr1G045430.15 | Rfam | 14.6 | MIR1122 | 2.3e-15 |
| Hvulgare_HORVU7Hr1G045430.15 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway; LTR/Gypsy; RC/Helitron; Satellite; Unknown | |
| Hvulgare_HORVU7Hr1G045430.9 | RepBase (RepeatMasker) | 2014-01-31 | DNA |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
