Hvulgare HORVU7Hr1G052530
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU7Hr1G052530 [ HORVU7Hr1G052530] |
chr7H | 200516181 | 200519231 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU7Hr1G052530.1 HORVU7Hr1G052530.1 |
High | No | 683 | OG0049205 | Get ORF Coding potential... Type: noncoding Potential: -1.223 Folding energies... MFEI: -24.744 AMFE: -0.628 GC content %: 39.385 | |
| Hvulgare_HORVU7Hr1G052530.13 HORVU7Hr1G052530.13 |
High | No | 360 | OG0013322 | Get ORF Coding potential... Type: noncoding Potential: -0.950 Folding energies... MFEI: -20.944 AMFE: -0.524 GC content %: 40.000 | |
| Hvulgare_HORVU7Hr1G052530.14 HORVU7Hr1G052530.14 |
High | No | 389 | OG0013322 | Get ORF Coding potential... Type: noncoding Potential: -0.671 Folding energies... MFEI: -20.977 AMFE: -0.526 GC content %: 39.846 | |
| Hvulgare_HORVU7Hr1G052530.18 HORVU7Hr1G052530.18 |
Low | No | 770 | OG0049206 | Get ORF Coding potential... Type: noncoding Potential: -0.584 Folding energies... MFEI: -24.182 AMFE: -0.613 GC content %: 39.481 | |
| Hvulgare_HORVU7Hr1G052530.19 HORVU7Hr1G052530.19 |
Low | No | 1817 | OG0049207 | Get ORF Coding potential... Type: noncoding Potential: -0.490 Folding energies... MFEI: -26.995 AMFE: -0.687 GC content %: 39.296 | |
| Hvulgare_HORVU7Hr1G052530.2 HORVU7Hr1G052530.2 |
High | No | 607 | OG0006010 | Get ORF Coding potential... Type: noncoding Potential: -0.625 Folding energies... MFEI: -24.629 AMFE: -0.610 GC content %: 40.362 | |
| Hvulgare_HORVU7Hr1G052530.5 HORVU7Hr1G052530.5 |
High | No | 410 | OG0006010 | Get ORF Coding potential... Type: noncoding Potential: -1.004 Folding energies... MFEI: -21.976 AMFE: -0.563 GC content %: 39.024 | |
| Hvulgare_HORVU7Hr1G052530.6 HORVU7Hr1G052530.6 |
High | No | 448 | OG0006010 | Get ORF Coding potential... Type: noncoding Potential: -0.710 Folding energies... MFEI: -22.656 AMFE: -0.570 GC content %: 39.732 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU7Hr1G052530.18 | SwissProt | 2021-04-01 | P0DPE0 | 1.4e-5 |
| Hvulgare_HORVU7Hr1G052530.19 | SwissProt | 2021-04-01 | P0DPE0 | 3.17e-5 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
